Evidence map›Paper›PMID 24782114›Full record

ArticleEpigenetics2014

A balance between activating and repressive histone modifications regulates cystic fibrosis transmembrane conductance regulator (CFTR) expression in vivo.

Anne Bergougnoux, Isabelle Rivals, Alessandro Liquori, Caroline Raynal, Jessica Varilh, Milena Magalhães, Marie-José Perez, Nicole Bigi, Marie Des Georges, Raphaël Chiron and 3 more

Registry-linked trialOpen access · bronzeAbstract readComparative Study
In one paragraph

Article in Epigenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02976714 (Identification of Predictive Epigenetic Biomarkers of Lung Disease Severity in Cystic Fibrosis), which is not on this map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02976714 nacompletednot on this mapstarted 2016, after this paper: background citation

Identification of Predictive Epigenetic Biomarkers of Lung Disease Severity in Cystic Fibrosis

TypeinterventionalSponsorUniversity Hospital, MontpellierRan2016 to 2021Enrolled50ConditionsCystic FibrosisArmsspontaneous sputum
3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Epigenetic regulation and chromatin organization in cystic fibrosis airways.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2026
    Review
  2. Article
  3. Review
  4. Cellular heterogeneity in the 16HBE14oPhysiological reports · 2023
    Article
  5. Review
  6. Epigenome editing of the CFTR-locus for treatment of cystic fibrosis.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2022
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Anne BergougnouxINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France; CHU Montpellier; Montpellier, France.
Isabelle RivalsEquipe de Statistique Appliquée; ESPCI ParisTech; Paris, France.
Alessandro LiquoriINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France.
Caroline RaynalINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France; CHU Montpellier; Montpellier, France.
Jessica VarilhINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France; CHU Montpellier; Montpellier, France.
Milena MagalhãesINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France.
Marie-José PerezCHU Montpellier; Montpellier, France.
Nicole BigiCHU Montpellier; Montpellier, France.
Marie Des GeorgesINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France; CHU Montpellier; Montpellier, France.
Raphaël ChironCHU Montpellier; Montpellier, France.
Ahmed Saad Squalli-HoussainiINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France.
Mireille ClaustresINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France; CHU Montpellier; Montpellier, France.
Albertina De SarioINSERM U827; Montpellier, France; Université Montpellier 1; Montpellier, France.
Centre Hospitalier Universitaire de Montpellier · FRUniversité de Montpellier · FRInserm · FRLaboratoire de Statistique Théorique et Appliquée · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic mechanisms that regulate CFTR, the gene responsible for cystic fibrosis, have been widely investigated in cultured cells. However, mechanisms responsible for tissue-specific and time-specific expression are not completely elucidated in vivo. Through the survey of public databases, we found that the promoter of CFTR was associated with bivalent chromatin in human embryonic stem (ES) cells. In this work, we analyzed fetal (at different stages of pregnancy) and adult tissues and showed that, in digestive and lung tissues, which expressed CFTR, H3K4me3 was maintained in the promoter. Histone acetylation was high in the promoter and in two intronic enhancers, especially in fetal tissues. In contrast, in blood cells, which did not express CFTR, the bivalent chromatin was resolved (the promoter was labeled by the silencing mark H3K27me3). Cis-regulatory sequences were associated with lowly acetylated histones. We also provide evidence that the tissue-specific expression of CFTR is not regulated by dynamic changes of DNA methylation in the promoter. Overall, this work shows that a balance between activating and repressive histone modifications in the promoter and intronic enhancers results in the fine regulation of CFTR expression during development, thereby ensuring tissue specificity.

Indexed as

Protein Processing, Post-TranslationalAcetylationBlood CellsCystic Fibrosis Transmembrane Conductance RegulatorDigestive SystemDNA MethylationFemaleFetusHistonesHumansLungMalePregnancyResponse ElementsCystic Fibrosis Transmembrane Conductance RegulatorHistonesbivalent chromatincystic fibrosisDNA methylationenhancersfetal tissueshistone modificationspromoter

Identifiers

PMID24782114
PMCPMC4143403
OpenAlexW2330097177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.