Evidence map›Paper›PMID 24780222›Full record

ArticleAnalytical biochemistry2014

Quantitative real-time kinetics of optogenetic proteins CRY2 and CIB1/N using single-molecule tools.

Yi Cui, Samrat Roy Choudhury, Joseph Irudayaraj

Open access · greenAbstract read
In one paragraph

Article in Analytical biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yi CuiDepartment of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, United States.
Samrat Roy ChoudhuryDepartment of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, United States.
Joseph IrudayarajDepartment of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, United States. Electronic address: josephi@purdue.edu.
Purdue University West Lafayette · US

Funding

Label-free, real-time detection of kinase activity in vitro and in single cells uR21CA157395 · NCI · PURDUE UNIVERSITY · PI IRUDAYARAJ, JOSEPH MK · 2011 to 2013
$610k
NCI NIH HHS R21 CA157395
6 · The paper itself

Abstract

In this work we evaluate the interaction of two optogenetic protein variants (CIB1, CIBN) with their complementary protein CRY2 by single-molecule tools in cell-free extracts. After validating the blue light induced co-localization of CRY2 and CIB1/N by Förster resonance energy transfer (FRET) in live cells, a fluorescence correlation spectroscopy (FCS) based method was developed to quantitatively determine the in vitro association of the extracted proteins. Our experiments suggest that CIB1, in comparison with CIBN, possesses a better coupling efficiency with CRY2 due to its intact protein structure and lower diffusion rate within 300s detection window.

Indexed as

Fluorescence Resonance Energy TransferMicroscopy, Electron, ScanningArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCryptochromesHeLa CellsHumansLuminescent ProteinsRecombinant Fusion ProteinsRed Fluorescent ProteinArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCIB1 protein, ArabidopsisCRY2 protein, ArabidopsisCryptochromesLuminescent ProteinsRecombinant Fusion ProteinsRed Fluorescent ProteinCIB1CIBNCRY2FCSFRETOptogenetic protein

Identifiers

PMID24780222
PMCPMC4341968
OpenAlexW2001312545

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.