ArticleBioMed research international2014
Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism.
Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Revisiting the Molecular Roadmap for Sugar Crops: Genome Reading, Trait Writing and Variety Redesigning.Plant biotechnology journal · 2026Review
- Genetic diversity and population structure of citrus rootstocks revealed by morphological traits and Start Codon Targeted (SCoT) polymorphism.BMC plant biology · 2026Article
- Evaluation of Genetic Diversity in Sugar Beet Using SCoT and ISSR Markers.Plants (Basel, Switzerland) · 2026Article
- Genetic diversity and population structure analysis of Indian blackberry (Syzygium cumini L.) using CAAT box‑derived polymorphism (CBDP) and start codon targeted polymorphism (SCoT) markers.Journal, genetic engineering & biotechnology · 2025Article
- Diversity of genome size, endopolyploidy and SCoT markers in 20 Trigonella (Fabaceae) species.Journal of applied genetics · 2024Article
- Article
- Evaluation of Morpho-Physiological and Yield-Associated Traits of Rice (Plants (Basel, Switzerland) · 2023Article
- Impacts of ZnO as a nanofertilizer on fenugreek: some biochemical parameters and SCoT analysis.Journal, genetic engineering & biotechnology · 2023Article
- Evaluation of a Sugarcane (Plants (Basel, Switzerland) · 2023Article
- Assessment of genetic diversity and relationships amongJournal of genetics · 2019Article
- Genetic diversity and structure ofHereditas · 2019Article
- Agro-morphological description, genetic diversity and population structure of sugarcane varieties from sub-tropical India.3 Biotech · 2018Article
- De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.).BMC genomics · 2016Article
- Genetic relationship and diversity among coconut (Cocos nucifera L.) accessions revealed through SCoT analysis.3 Biotech · 2015Article
- Article
- Potential of Start Codon Targeted (SCoT) markers to estimate genetic diversity and relationships among Chinese Elymus sibiricus accessions.Molecules (Basel, Switzerland) · 2015Article
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7 authors.
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Abstract
In-depth information on sugarcane germplasm is the basis for its conservation and utilization. Data on sugarcane molecular markers are limited for the Chinese sugarcane germplasm collections. In the present study, 20 start codon targeted (SCoT) marker primers were designed to assess the genetic diversity among 107 sugarcane accessions within a local sugarcane germplasm collection. These primers amplified 176 DNA fragments, of which 163 were polymorphic (92.85%). Polymorphic information content (PIC) values ranged from 0.783 to 0.907 with a mean of 0.861. Unweighted pair group method of arithmetic averages (UPGMA) cluster analysis of the SCoT marker data divided the 107 sugarcane accessions into six clusters at 0.674 genetic similarity coefficient level. Relatively abundant genetic diversity was observed among ROC22, ROC16, and ROC10, which occupied about 80% of the total sugarcane acreage in China, indicating their potential breeding value on Mainland China. Principal component analysis (PCA) partitioned the 107 sugarcane accessions into two major groups, the Domestic Group and the Foreign Introduction Group. Each group was further divided based on institutions, where the sugarcane accessions were originally developed. The knowledge of genetic diversity among the local sugarcane germplasm provided foundation data for managing sugarcane germplasm, including construction of a core collection and regional variety distribution and subrogation.
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