Evidence map›Paper›PMID 24778562›Full record

ArticleBalkan journal of medical genetics : BJMG2013

Twenty-Four Genes are Upregulated in Patients with Hypospadias.

R Karabulut, Z Turkyilmaz, K Sonmez, G Kumas, Sg Ergun, Ma Ergun, Ac Basaklar

Open access · goldAbstract read
In one paragraph

Article in Balkan journal of medical genetics : BJMG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Negative Regulation of Cytokine Signaling in Immunity.Cold Spring Harbor perspectives in biology · 2018
    Review
  10. Article
  11. The Genetic and Environmental Factors Underlying Hypospadias.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

R KarabulutDepartment of Pediatric Surgery, Gazi University Faculty of Medicine, Ankara, Turkey.
Z TurkyilmazDepartment of Pediatric Surgery, Gazi University Faculty of Medicine, Ankara, Turkey.
K SonmezDepartment of Pediatric Surgery, Gazi University Faculty of Medicine, Ankara, Turkey.
G KumasDepartment of Medical Genetics, Gazi University Faculty of Medicine, Ankara, Turkey.
Sg ErgunDepartment of Medical Genetics, Gazi University Faculty of Medicine, Ankara, Turkey.
Ma ErgunDepartment of Medical Genetics, Gazi University Faculty of Medicine, Ankara, Turkey.
Ac BasaklarDepartment of Pediatric Surgery, Gazi University Faculty of Medicine, Ankara, Turkey.
Gazi University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypospadias is a congenital hypoplasia of the penis, with displacement of the urethral opening along the ventral surface, and has been reported to be one of the most common congenital anomalies, occurring in approximately 1:250 to 1:300 live births. As hypospadias is reported to be an easily diagnosed malformation at the crossroads of genetics and environment, it is important to study the genetic component in order to elucidate its etiology. In this study, the gene expression profiles both in human hypospadias tissues and normal penile tissues were studied by Human Gene Expression Array. Twenty-four genes were found to be upregulated. Among these, ATF3 and CYR61 have been reported previously. Other genes that have not been previously reported were also found to be upregulated: BTG2, CD69, CD9, DUSP1, EGR1, EIF4A1, FOS, FOSB, HBEGF, HNRNPUL1, IER2, JUN, JUNB, KLF2, NR4A1, NR4A2, PTGS2, RGS1, RTN4, SLC25A25, SOCS3 and ZFP36 (p <0.05). Further studies including genome-wide association studies (GWAS) with expression studies in a large patient group will help us for identifiying the candidate gene(s) in the etiology of hypospadias.

Indexed as

Gene expressionHypospadiasMicrorarray

Identifiers

PMID24778562
PMCPMC4001414
OpenAlexW2076663391

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.