Evidence map›Paper›PMID 24777974›Full record

ArticleProtein science : a publication of the Protein Society2014

Folding of Aquaporin 1: multiple evidence that helix 3 can shift out of the membrane core.

Minttu T Virkki, Nitin Agrawal, Elin Edsbäcker, Susana Cristobal, Arne Elofsson, Anni Kauko

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Marginally hydrophobic transmembrane α-helices shaping membrane protein folding.Protein science : a publication of the Protein Society · 2015
    Review
  11. Article
  12. Protein Science Best Paper awards to Chih-Chia (Jack) Su and Minttu Virkki.Protein science : a publication of the Protein Society · 2015
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Minttu T VirkkiDepartment of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Solna, SE-171 21, Sweden.
Nitin Agrawal
Elin Edsbäcker
Susana Cristobal
Arne Elofsson
Anni Kauko

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The folding of most integral membrane proteins follows a two-step process: initially, individual transmembrane helices are inserted into the membrane by the Sec translocon. Thereafter, these helices fold to shape the final conformation of the protein. However, for some proteins, including Aquaporin 1 (AQP1), the folding appears to follow a more complicated path. AQP1 has been reported to first insert as a four-helical intermediate, where helix 2 and 4 are not inserted into the membrane. In a second step, this intermediate is folded into a six-helical topology. During this process, the orientation of the third helix is inverted. Here, we propose a mechanism for how this reorientation could be initiated: first, helix 3 slides out from the membrane core resulting in that the preceding loop enters the membrane. The final conformation could then be formed as helix 2, 3, and 4 are inserted into the membrane and the reentrant regions come together. We find support for the first step in this process by showing that the loop preceding helix 3 can insert into the membrane. Further, hydrophobicity curves, experimentally measured insertion efficiencies and MD-simulations suggest that the barrier between these two hydrophobic regions is relatively low, supporting the idea that helix 3 can slide out of the membrane core, initiating the rearrangement process.

Indexed as

Protein FoldingAnimalsAquaporin 1Aquaporin 4Cell MembraneHumansHydrophobic and Hydrophilic InteractionsMolecular Dynamics SimulationPoint MutationProtein ConformationProtein Structure, SecondaryRatsAquaporin 1Aquaporin 4hydrophobicitymembrane proteinmolecular dynamicsprotein foldingtranslocon recognition

Identifiers

PMID24777974
PMCPMC4088982

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.