Evidence map›Paper›PMID 24776987›Full record

ArticleG3 (Bethesda, Md.)2014

The insertion Green Monster (iGM) method for expression of multiple exogenous genes in yeast.

Vyacheslav M Labunskyy, Yo Suzuki, Timothy J Hanly, Ayako Murao, Frederick P Roth, Vadim N Gladyshev

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Efforts to make and apply humanized yeast.Briefings in functional genomics · 2016
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Vyacheslav M LabunskyyDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115.
Yo SuzukiDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California 92037.
Timothy J HanlyDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California 92037.
Ayako MuraoDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California 92037.
Frederick P RothDonnelly Centre and Departments of Molecular Genetics and Computer Science, University of Toronto, Toronto, Ontario M5S 3E1, Canada Lunenfeld-Tanenbaum Research Institute, Mt. Sinai Hospital, Toronto, Ontario M5T 3L9, Canada fritz.roth@utoronto.ca vgladyshev@rics.bwh.harvard.edu.
Vadim N GladyshevDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115 fritz.roth@utoronto.ca vgladyshev@rics.bwh.harvard.edu.
J. Craig Venter Institute · USHarvard University · USBrigham and Women's Hospital · US

Funding

Genomic Analysis of Network Perturbations in Human DiseaseP50HG004233 · NHGRI · DANA-FARBER CANCER INST · PI VIDAL, MARC · 2007 to 2017
$31.6M
Methionine sulfoxide reduction, selenium and agingR01AG021518 · NIA · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2003 to 2018
$5.0M
IDENTITY OF TERMINATOR AND SELENOCYSTEINE UGA CODONSR01GM061603 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2000 to 2016
$4.0M
Functions of thioredoxin reductases and their targetsR37GM065204 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2011 to 2020
$4.0M
Functions of Mammalian Thioredoxin ReductasesR01GM065204 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2002 to 2009
$2.2M
Endoplasmic Reticulum Thiol Redox State and Unfolded Protein Response in AgingR00AG040191 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LABUNSKYY, VYACHESLAV M · 2014 to 2016
$723k
Endoplasmic Reticulum Thiol Redox State and Unfolded Protein Response in AgingK99AG040191 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI LABUNSKYY, VYACHESLAV M · 2012 to 2013
$262k
NHGRI NIH HHS HG004233NHGRI NIH HHS P50 HG004233NIA NIH HHS AG021518NIA NIH HHS AG040191NIA NIH HHS K99 AG040191NIA NIH HHS R00 AG040191NIA NIH HHS R01 AG021518NIGMS NIH HHS GM061603NIGMS NIH HHS GM065204NIGMS NIH HHS R01 GM061603NIGMS NIH HHS R01 GM065204NIGMS NIH HHS R37 GM065204
6 · The paper itself

Abstract

Being a simple eukaryotic organism, Saccharomyces cerevisiae provides numerous advantages for expression and functional characterization of proteins from higher eukaryotes, including humans. However, studies of complex exogenous pathways using yeast as a host have been hampered by the lack of tools to engineer strains expressing a large number of genetic components. In addition to inserting multiple genes, it is often desirable to knock out or replace multiple endogenous genes that might interfere with the processes studied. Here, we describe the "insertion Green Monster" (iGM) set of expression vectors that enable precise insertion of many heterologous genes into the yeast genome in a rapid and reproducible manner and permit simultaneous replacement of selected yeast genes. As a proof of principle, we have used the iGM method to replace components of the yeast pathway for methionine sulfoxide reduction with genes encoding the human selenoprotein biosynthesis machinery and generated a single yeast strain carrying 11 exogenous components of the selenoprotein biosynthetic pathway in precisely engineered loci.

Indexed as

Amino Acid SequenceGenetic VectorsGreen Fluorescent ProteinsHumansMolecular Sequence DataMutagenesis, InsertionalPhylogenyRibosomal ProteinsRNA, MessengerSaccharomyces cerevisiaeSelenoproteinsSequence Analysis, RNAGreen Fluorescent ProteinsRibosomal ProteinsRNA, MessengerSelenoproteinsflow cytometrygreen fluorescent proteinmulti-gene insertionsSaccharomyces cerevisiaesynthetic biology

Identifiers

PMID24776987
PMCPMC4455768
OpenAlexW2098880867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.