Evidence map›Paper›PMID 24776652›Full record

ArticleScientific reports2014

Thermal-triggerd proteinquake leads to disassembly of DegP hexamer as an imperative activation step.

Shanshan Li, Rui Wang, Deyong Li, Jing Ma, Heng Li, Xiaochuan He, Zengyi Chang, Yuxiang Weng

Abstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Stress-Responsive Periplasmic Chaperones in Bacteria.Frontiers in molecular biosciences · 2021
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shanshan LiLaboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China 100190.
Rui WangState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Protein Science, Peking University, Beijing, China 100871.
Deyong LiLaboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China 100190.
Jing MaState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Protein Science, Peking University, Beijing, China 100871.
Heng LiLaboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China 100190.
Xiaochuan HeLaboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China 100190.
Zengyi ChangState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Protein Science, Peking University, Beijing, China 100871.
Yuxiang WengLaboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China 100190.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Escherichia coli DegP has been reported to function both as molecular chaperone and protease for the quality control of outer membrane protein biogenesis. Activation of the inactive DegP hexamers was believed to occur via their disassembly into trimeric units and subsequent reassembly into larger oligomers (12-mers and 24-mers). Here, we analyzed the thermal stability and the unfolding dynamics of the different secondary structure components of the DegP hexamers using Fourier transform infrared spectroscopy and temperature-jump nanosecond time-resolved IR difference absorbance spectroscopy. We found that the interfacial secondary structure components possess a degreed thermal stability, with the disassembly of the DegP hexamers follows a "proteinquake" manner, such that the fully exposed parts of the interfacial β-sheets serving as the temperature sensor and epicenter to drive the sequential unfolding/disassembly process that finishes within about 134 ns at room temperature.

Indexed as

Protein MultimerizationTemperatureEnzyme ActivationHeat-Shock ProteinsModels, MolecularPeriplasmic ProteinsProtein ConformationProtein StabilityProtein UnfoldingSerine EndopeptidasesSpectroscopy, Fourier Transform InfraredThermodynamicsDegP proteaseHeat-Shock ProteinsPeriplasmic ProteinsSerine Endopeptidases

Identifiers

PMID24776652
PMCPMC4003476

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.