Evidence map›Paper›PMID 24772107›Full record

ArticleFrontiers in microbiology2014

Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities.

Regina Lamendella, Steven Strutt, Sharon Borglin, Romy Chakraborty, Neslihan Tas, Olivia U Mason, Jenni Hultman, Emmanuel Prestat, Terry C Hazen, Janet K Jansson

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 186 citations in OpenAlex.

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  9. A review on marine plastisphere: biodiversity, formation, and role in degradation.Computational and structural biotechnology journal · 2022
    Review
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Regina LamendellaLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA ; Biology Department, Juniata College Huntingdon, PA, USA.
Steven StruttBiology Department, Juniata College Huntingdon, PA, USA.
Sharon BorglinLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA.
Romy ChakrabortyLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA.
Neslihan TasLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA.
Olivia U MasonLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA ; Department of Earth, Ocean and Atmospheric Science, Florida State University Tallahassee, FL, USA.
Jenni HultmanLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA ; Department of Food Hygiene and Environmental Health, University of Helsinki Helsinki, Finland.
Emmanuel PrestatLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA.
Terry C HazenLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA ; Department of Civil and Environmental Engineering, University of Tennessee Knoxville, TN, USA ; Oak Ridge National Laboratory, Biosciences Division Oak Ridge, TN, USA.
Janet K JanssonLawrence Berkeley National Laboratory, Earth Sciences Division, Ecology Department Berkeley, CA, USA ; Department of Energy, Joint Genome Institute Walnut Creek, CA, USA.
Lawrence Berkeley National Laboratory · USNASA Earth ScienceJuniata College · USUniversity of Tennessee at Knoxville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the major environmental concerns of the Deepwater Horizon oil spill in the Gulf of Mexico was the ecological impact of the oil that reached shorelines of the Gulf Coast. Here we investigated the impact of the oil on the microbial composition in beach samples collected in June 2010 along a heavily impacted shoreline near Grand Isle, Louisiana. Successional changes in the microbial community structure due to the oil contamination were determined by deep sequencing of 16S rRNA genes. Metatranscriptomics was used to determine expression of functional genes involved in hydrocarbon degradation processes. In addition, potential hydrocarbon-degrading Bacteria were obtained in culture. The 16S data revealed that highly contaminated samples had higher abundances of Alpha- and Gammaproteobacteria sequences. Successional changes in these classes were observed over time, during which the oil was partially degraded. The metatranscriptome data revealed that PAH, n-alkane, and toluene degradation genes were expressed in the contaminated samples, with high homology to genes from Alteromonadales, Rhodobacterales, and Pseudomonales. Notably, Marinobacter (Gammaproteobacteria) had the highest representation of expressed genes in the samples. A Marinobacter isolated from this beach was shown to have potential for transformation of hydrocarbons in incubation experiments with oil obtained from the Mississippi Canyon Block 252 (MC252) well; collected during the Deepwater Horizon spill. The combined data revealed a response of the beach microbial community to oil contaminants, including prevalence of Bacteria endowed with the functional capacity to degrade oil.

Indexed as

16S rRNA genehydrocarbonsmetatranscriptomicsmicrobial communitiesoil spill

Identifiers

PMID24772107
PMCPMC3982105
OpenAlexW2089352282

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.