Evidence map›Paper›PMID 24771862›Full record

ArticleThe Journal of infectious diseases2014

Novel genotyping tools for investigating transmission dynamics of Plasmodium falciparum.

Rahel Wampfler, Lincoln Timinao, Hans-Peter Beck, Issiaka Soulama, Alfred B Tiono, Peter Siba, Ivo Mueller, Ingrid Felger

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
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  7. Biology and epidemiology ofParasite epidemiology and control · 2023
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  11. Prevalence of asymptomaticWellcome open research · 2020
    Article
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  14. The American journal of tropical medicine and hygiene · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rahel WampflerMedical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute University of Basel, Switzerland.
Lincoln TiminaoMedical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute University of Basel, Switzerland Papua New Guinea Institute of Medical Research, Goroka, Eastern Highland Province.
Hans-Peter BeckMedical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute University of Basel, Switzerland.
Issiaka SoulamaCentre National de Recherche et de Formation sur le Paludisme, Ouagadougou, Burkina Faso.
Alfred B TionoCentre National de Recherche et de Formation sur le Paludisme, Ouagadougou, Burkina Faso.
Peter SibaPapua New Guinea Institute of Medical Research, Goroka, Eastern Highland Province.
Ivo MuellerWalter and Eliza Hall Institute, Parkville, Victoria, Australia Barcelona Centre for International Health Research (CRESIB), Spain.
Ingrid FelgerMedical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute University of Basel, Switzerland.

Funding

TransmissionU19AI089686 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KAZURA, JAMES WALTER · 2010 to 2016
$9.9M
NIAID NIH HHS U19 AI089686
6 · The paper itself

Abstract

backgroundDifferentiation between gametocyte-producing Plasmodium falciparum clones depends on both high levels of stage-specific transcripts and high genetic diversity of the selected genotyping marker obtained by a high-resolution typing method. By analyzing consecutive samples of one host, the contribution of each infecting clone to transmission and the dynamics of gametocyte production in multiclone infections can be studied.

methodsWe have evaluated capillary electrophoresis based differentiation of 6 length-polymorphic gametocyte genes. RNA and DNA of 25 µL whole blood from 46 individuals from Burkina Faso were simultaneously genotyped.

resultsHighest discrimination power was achieved by pfs230 with 18 alleles, followed by pfg377 with 15 alleles. When assays were performed in parallel on RNA and DNA, 85.7% of all pfs230 samples and 59.5% of all pfg377 samples contained at least one matching genotype in DNA and RNA.

conclusionsThe imperfect detection in both, DNA and RNA, was identified as major limitation for investigating transmission dynamics, owing primarily to the volume of blood processed and the incomplete representation of all clones in the sample tested. Abundant low-density gametocyte carriers impede clone detectability, which may be improved by analyzing larger volumes and detecting initially sequestered gametocyte clones in follow-up samples.

Indexed as

GenotypeAllelesAmino Acid SequenceBurkina FasoDNA, ProtozoanHumansMalaria, FalciparumMolecular Sequence DataPlasmodium falciparumRNA, ProtozoanDNA, ProtozoanRNA, Protozoancapillary electrophoresisgametocytesgenotypingpfg377pfs230Plasmodium falciparumtransmission dynamics

Identifiers

PMID24771862
PMCPMC4271069

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.