ArticleNucleic acids research2014
NetVenn: an integrated network analysis web platform for gene lists.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- List2Net: Linking multiple lists of biological data in a network context.Computational and structural biotechnology journal · 2024Article
- The mechanisms of Huangqi Guizhi Wuwu decoction in treating ischaemic stroke based on network pharmacology and experiment verification.Pharmaceutical biology · 2023Article
- FNDC3B and BPGM Are Involved in Human Papillomavirus-Mediated Carcinogenesis of Cervical Cancer.Frontiers in oncology · 2021Article
- Article
- NetConfer: a web application for comparative analysis of multiple biological networks.BMC biology · 2020Article
- Global Evolutionary Analysis of 11 Gene Families Part of Reactive Oxygen Species (ROS) Gene Network in FourAntioxidants (Basel, Switzerland) · 2020Article
- Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments.BMC bioinformatics · 2019Article
- Metatranscriptomic Analysis of Multiple Environmental Stresses Identifies RAP2.4 Gene Associated with Arabidopsis Immunity to Botrytis cinerea.Scientific reports · 2019Article
- Nitric oxide contributes to protein homeostasis by S-nitrosylations of the chaperone HSPA8 and the ubiquitin ligase UBE2D.Redox biology · 2019Article
- EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.Nucleic acids research · 2018Article
- Integrating genomic data from high-throughput studies with computational modeling reveals differences in the molecular basis of hyposalivation between type 1 and type 2 diabetes.Clinical oral investigations · 2018Article
- CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components.BMC bioinformatics · 2017Article
- Integrative genomics of microglia implicates DLG4 (PSD95) in the white matter development of preterm infants.Nature communications · 2017Article
- PluriPred: AWeb server for predicting proteins involved in pluripotent network.Journal of biosciences · 2016Article
- Progranulin promotes peripheral nerve regeneration and reinnervation: role of notch signaling.Molecular neurodegeneration · 2016Article
- Comparative proteomic analysis of growth hormone secretagogue A233 treatment of murine macrophage cells J774A.2 indicates it has a role in antiviral innate response.Biochemistry and biophysics reports · 2016Article
- Article
- Predicting CK2 beta-dependent substrates using linear patterns.Biochemistry and biophysics reports · 2015Article
- OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species.Nucleic acids research · 2015Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Many lists containing biological identifiers, such as gene lists, have been generated in various genomics projects. Identifying the overlap among gene lists can enable us to understand the similarities and differences between the data sets. Here, we present an interactome network-based web application platform named NetVenn for comparing and mining the relationships among gene lists. NetVenn contains interactome network data publically available for several species and supports a user upload of customized interactome network data. It has an efficient and interactive graphic tool that provides a Venn diagram view for comparing two to four lists in the context of an interactome network. NetVenn also provides a comprehensive annotation of genes in the gene lists by using enriched terms from multiple functional databases. In addition, it allows for mapping the gene expression data, providing information of transcription status of genes in the network. The power graph analysis tool is integrated in NetVenn for simplified visualization of gene relationships in the network. NetVenn is freely available at http://probes.pw.usda.gov/NetVenn or http://wheat.pw.usda.gov/NetVenn.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.