Evidence map›Paper›PMID 24771027›Full record

ArticleApplied and environmental microbiology2014

Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year.

Simone Dealtry, Peter N Holmsgaard, Vincent Dunon, Sven Jechalke, Guo-Chun Ding, Ellen Krögerrecklenfort, Holger Heuer, Lars H Hansen, Dirk Springael, Sebastian Zühlke and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 57 citations in OpenAlex.

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  8. Environmental Distribution of AR Class 1 Integrons in Upper Adige River Catchment (Northern Italy).International journal of environmental research and public health · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Simone DealtryJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany.
Peter N HolmsgaardSection for Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Vincent DunonDivision of Soil and Water Management, Katholieke Universiteit Leuven, Leuven, Belgium.
Sven JechalkeJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany.
Guo-Chun DingJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany College of Resources & Environmental Sciences, China Agricultural University, Beijing, China.
Ellen KrögerrecklenfortJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany.
Holger HeuerJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany.
Lars H HansenSection for Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark Department of Environmental Science, Aarhus University, Roskilde, Denmark.
Dirk SpringaelDivision of Soil and Water Management, Katholieke Universiteit Leuven, Leuven, Belgium.
Sebastian ZühlkeInstitut für Umweltforschung (INFU) der Fakultät für Chemie und Chemische Biologie, Lehrstuhl für Umweltchemie und Analytische Chemie, Technische Universität Dortmund, Dortmund, Germany.
Søren J SørensenSection for Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Kornelia SmallaJulius Kühn-Institut-Federal Research Centre for Cultivated Plants (JKI), Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany kornelia.smalla@jki.bund.de.
Julius Kühn-Institut · DEUniversity of Copenhagen · DKKU Leuven · BETU Dortmund University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biopurification systems (BPS) are used on farms to control pollution by treating pesticide-contaminated water. It is assumed that mobile genetic elements (MGEs) carrying genes coding for enzymes involved in degradation might contribute to the degradation of pesticides. Therefore, the composition and shifts of MGEs, in particular, of IncP-1 plasmids carried by BPS bacterial communities exposed to various pesticides, were monitored over the course of an agricultural season. PCR amplification of total community DNA using primers targeting genes specific to different plasmid groups combined with Southern blot hybridization indicated a high abundance of plasmids belonging to IncP-1, IncP-7, IncP-9, IncQ, and IncW, while IncU and IncN plasmids were less abundant or not detected. Furthermore, the integrase genes of class 1 and 2 integrons (intI1, intI2) and genes encoding resistance to sulfonamides (sul1, sul2) and streptomycin (aadA) were detected and seasonality was revealed. Amplicon pyrosequencing of the IncP-1 trfA gene coding for the replication initiation protein revealed high IncP-1 plasmid diversity and an increase in the abundance of IncP-1β and a decrease in the abundance of IncP-1ε over time. The data of the chemical analysis showed increasing concentrations of various pesticides over the course of the agricultural season. As an increase in the relative abundances of bacteria carrying IncP-1β plasmids also occurred, this might point to a role of these plasmids in the degradation of many different pesticides.

Indexed as

Interspersed Repetitive SequencesBacteriaBiotransformationDNA, BacterialMetabolic Networks and PathwaysMolecular Sequence DataPesticidesPlasmidsPolymerase Chain ReactionSequence Analysis, DNAWater PollutantsDNA, BacterialPesticidesWater Pollutants

Identifiers

PMID24771027
PMCPMC4054223
OpenAlexW2042339951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.