Evidence map›Paper›PMID 24771025›Full record

ArticleApplied and environmental microbiology2014

300-Fold increase in production of the Zn2+-dependent dechlorinase TrzN in soluble form via apoenzyme stabilization.

Colin J Jackson, Christopher W Coppin, Paul D Carr, Alexey Aleksandrov, Matthew Wilding, Elena Sugrue, Joanna Ubels, Michael Paks, Janet Newman, Thomas S Peat and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. A Thermostable Bacterial Metallohydrolase that Degrades Organophosphate Plasticizers.Chembiochem : a European journal of chemical biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The structure of the hexameric atrazine chlorohydrolase AtzA.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Colin J JacksonResearch School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia Institut de Biologie Structurale, Grenoble, France colin.jackson@anu.edu.au colin.scott@csiro.au.
Christopher W CoppinCSIRO Ecosystems Sciences, Black Mountain, Canberra, Australian Capital Territory, Australia.
Paul D CarrResearch School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
Alexey AleksandrovInstitut de Biologie Structurale, Grenoble, France.
Matthew WildingCSIRO Ecosystems Sciences, Black Mountain, Canberra, Australian Capital Territory, Australia.
Elena SugrueResearch School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
Joanna UbelsResearch School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
Michael PaksResearch School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
Janet NewmanCSIRO Materials, Science and Engineering, Parkville, Victoria, Australia.
Thomas S PeatCSIRO Materials, Science and Engineering, Parkville, Victoria, Australia.
Robyn J RussellCSIRO Ecosystems Sciences, Black Mountain, Canberra, Australian Capital Territory, Australia.
Martin FieldInstitut de Biologie Structurale, Grenoble, France.
Martin WeikInstitut de Biologie Structurale, Grenoble, France.
John G OakeshottCSIRO Ecosystems Sciences, Black Mountain, Canberra, Australian Capital Territory, Australia.
Colin ScottCSIRO Ecosystems Sciences, Black Mountain, Canberra, Australian Capital Territory, Australia colin.jackson@anu.edu.au colin.scott@csiro.au.
Australian National University · AUCommonwealth Scientific and Industrial Research Organisation · AUEcosystem Sciences · AUInstitut de Biologie Structurale · FRUniversité Grenoble Alpes · FRACT Government

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial metalloenzymes constitute a large library of biocatalysts, a number of which have already been shown to catalyze the breakdown of toxic chemicals or industrially relevant chemical transformations. However, while there is considerable interest in harnessing these catalysts for biotechnology, for many of the enzymes, their large-scale production in active, soluble form in recombinant systems is a significant barrier to their use. In this work, we demonstrate that as few as three mutations can result in a 300-fold increase in the expression of soluble TrzN, an enzyme from Arthrobacter aurescens with environmental applications that catalyzes the hydrolysis of triazine herbicides, in Escherichia coli. Using a combination of X-ray crystallography, kinetic analysis, and computational simulation, we show that the majority of the improvement in expression is due to stabilization of the apoenzyme rather than the metal ion-bound holoenzyme. This provides a structural and mechanistic explanation for the observation that many compensatory mutations can increase levels of soluble-protein production without increasing the stability of the final, active form of the enzyme. This study provides a molecular understanding of the importance of the stability of metal ion free states to the accumulation of soluble protein and shows that differences between apoenzyme and holoenzyme structures can result in mutations affecting the stability of either state differently.

Indexed as

ApoenzymesArthrobacterComputer SimulationCrystallography, X-RayEnzyme StabilityEscherichia coliHerbicidesHydrolasesHydrolysisKineticsModels, MolecularMutant ProteinsMutation, MissenseProtein ConformationRecombinant ProteinsSolubilityApoenzymesHerbicidesHydrolasesMutant ProteinsRecombinant ProteinsTriazines

Identifiers

PMID24771025
PMCPMC4054219
OpenAlexW2111746481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.