Evidence map›Paper›PMID 24769853›Full record

ArticlePloS one2014

Phospholipid-derived fatty acids and quinones as markers for bacterial biomass and community structure in marine sediments.

Tadao Kunihiro, Bart Veuger, Diana Vasquez-Cardenas, Lara Pozzato, Marie Le Guitton, Kazuyoshi Moriya, Michinobu Kuwae, Koji Omori, Henricus T S Boschker, Dick van Oevelen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tadao KunihiroDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands; Department of Marine Microbiology, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Bart VeugerDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Diana Vasquez-CardenasDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands; Department of Marine Microbiology, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Lara PozzatoDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Marie Le GuittonDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Kazuyoshi MoriyaSchool of Natural Science & Technology, Kanazawa University, Kakuma-machi, Kanazawa, Japan.
Michinobu KuwaeCenter for Marine Environmental Studies (CMES), Ehime University, Matsuyama, Ehime, Japan.
Koji OmoriCenter for Marine Environmental Studies (CMES), Ehime University, Matsuyama, Ehime, Japan.
Henricus T S BoschkerDepartment of Marine Microbiology, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Dick van OevelenDepartment of Ecosystem Studies, Royal Netherlands Institute of Sea Research (NIOZ), Yerseke, The Netherlands.
Royal Netherlands Institute for Sea Research · NLEhime University · JPKanazawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phospholipid-derived fatty acids (PLFA) and respiratory quinones (RQ) are microbial compounds that have been utilized as biomarkers to quantify bacterial biomass and to characterize microbial community structure in sediments, waters, and soils. While PLFAs have been widely used as quantitative bacterial biomarkers in marine sediments, applications of quinone analysis in marine sediments are very limited. In this study, we investigated the relation between both groups of bacterial biomarkers in a broad range of marine sediments from the intertidal zone to the deep sea. We found a good log-log correlation between concentrations of bacterial PLFA and RQ over several orders of magnitude. This relationship is probably due to metabolic variation in quinone concentrations in bacterial cells in different environments, whereas PLFA concentrations are relatively stable under different conditions. We also found a good agreement in the community structure classifications based on the bacterial PLFAs and RQs. These results strengthen the application of both compounds as quantitative bacterial biomarkers. Moreover, the bacterial PLFA- and RQ profiles revealed a comparable dissimilarity pattern of the sampled sediments, but with a higher level of dissimilarity for the RQs. This means that the quinone method has a higher resolution for resolving differences in bacterial community composition. Combining PLFA and quinone analysis as a complementary method is a good strategy to yield higher resolving power in bacterial community structure.

Indexed as

BiomarkersBiomassCluster AnalysisEnvironmental MicrobiologyFatty AcidsGeologic SedimentsMicrobiotaPhospholipidsProteobacteriaQuinonesBiomarkersFatty AcidsPhospholipidsQuinones

Identifiers

PMID24769853
PMCPMC4000199
OpenAlexW1964225784

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.