Evidence map›Paper›PMID 24769698›Full record

ArticleJournal of bacteriology2014

Steady-state hydrogen peroxide induces glycolysis in Staphylococcus aureus and Pseudomonas aeruginosa.

Xin Deng, Haihua Liang, Olesya A Ulanovskaya, Quanjiang Ji, Tianhong Zhou, Fei Sun, Zhike Lu, Alan L Hutchison, Lefu Lan, Min Wu and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Glyceraldehyde-3-phosphate dehydrogenase homologs as bifunctional gatekeepers of metabolic segregation inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. mBio · 2024
    Article
  9. Article
  10. Article
  11. Adaptive Metabolism ofJournal of proteome research · 2022
    Article
  12. Article
  13. Insights Into the Impact of Small RNA SprC on the Metabolism and Virulence ofFrontiers in cellular and infection microbiology · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Glutathione Activates Type III Secretion System Through Vfr inFrontiers in cellular and infection microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Xin DengDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Haihua LiangDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Olesya A UlanovskayaThe Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California, USA Department of Chemical Physiology, The Scripps Research Institute, La Jolla, California, USA.
Quanjiang JiDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Tianhong ZhouDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Fei SunDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Zhike LuDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Alan L HutchisonDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA.
Lefu LanShanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong Zhangjiang Hi-Tech Park, Shanghai, China.
Min WuDepartment of Biochemistry and Molecular Biology, University of North Dakota, Grand Forks, North Dakota, USA.
Benjamin F CravattThe Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California, USA Department of Chemical Physiology, The Scripps Research Institute, La Jolla, California, USA.
Chuan HeDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, USA chuanhe@uchicago.edu.
University of Chicago · USScripps Research Institute · USShanghai Institute of Materia Medica · CNUniversity of North Dakota · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
CORE: ADMINISTRATIVEP50GM081892 · NIGMS · UNIVERSITY OF CHICAGO · PI WHITE, KEVIN P. · 2008 to 2013
$15.9M
Tuning Virulence Determinants in Staphylococcus aureusR01AI074658 · NIAID · UNIVERSITY OF CHICAGO · PI HE, CHUAN · 2007 to 2016
$3.8M
NCATS NIH HHS UL1 TR000430NIAID NIH HHS AI074658NIAID NIH HHS R01 AI074658NIGMS NIH HHS P50 GM081892NIGMS NIH HHS P50GM081892NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from human pathogens Staphylococcus aureus and Pseudomonas aeruginosa can be readily inhibited by reactive oxygen species (ROS)-mediated direct oxidation of their catalytic active cysteines. Because of the rapid degradation of H2O2 by bacterial catalase, only steady-state but not one-dose treatment with H2O2 rapidly induces glycolysis and the pentose phosphate pathway (PPP). We conducted transcriptome sequencing (RNA-seq) analyses to globally profile the bacterial transcriptomes in response to a steady level of H2O2, which revealed profound transcriptional changes, including the induced expression of glycolytic genes in both bacteria. Our results revealed that the inactivation of GAPDH by H2O2 induces metabolic levels of glycolysis and the PPP; the elevated levels of fructose 1,6-biphosphate (FBP) and 2-keto-3-deoxy-6-phosphogluconate (KDPG) lead to dissociation of their corresponding glycolytic repressors (GapR and HexR, respectively) from their cognate promoters, thus resulting in derepression of the glycolytic genes to overcome H2O2-stalled glycolysis in S. aureus and P. aeruginosa, respectively. Both GapR and HexR may directly sense oxidative stresses, such as menadione.

Indexed as

Base SequenceGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGluconatesGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)GlycolysisHydrogen PeroxideOxidantsPseudomonas aeruginosaRNA, BacterialStaphylococcus aureusTranscriptome2-keto-3-deoxy-6-phosphogluconateGluconatesGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Hydrogen PeroxideOxidantsRNA, Bacterial

Identifiers

PMID24769698
PMCPMC4097596
OpenAlexW2165066279

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.