Evidence map›Paper›PMID 24769317›Full record

ArticleBiology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation2014

Immunoglobulin and T cell receptor gene high-throughput sequencing quantifies minimal residual disease in acute lymphoblastic leukemia and predicts post-transplantation relapse and survival.

Aaron C Logan, Nikita Vashi, Malek Faham, Victoria Carlton, Katherine Kong, Ismael Buño, Jianbiao Zheng, Martin Moorhead, Mark Klinger, Bing Zhang and 3 more

Open access · greenAbstract read
In one paragraph

Article in Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 147 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Next-Generation Sequencing in Adult B Cell Acute Lymphoblastic Leukemia Patients.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2017
    Trial
  5. Trial
  6. Trial
  7. Trial
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Aaron C LoganDivision of Hematology and Blood and Marrow Transplantation, Department of Medicine, University of California, San Francisco, San Francisco, California. Electronic address: aclogan@medicine.ucsf.edu.
Nikita VashiDivision of Blood and Marrow Transplantation, Department of Medicine, Stanford University School of Medicine, Stanford, California.
Malek FahamSequenta Inc., South San Francisco, California.
Victoria CarltonSequenta Inc., South San Francisco, California.
Katherine KongSequenta Inc., South San Francisco, California.
Ismael BuñoDepartment of Hematology, Hospital G.U. Gregorio Maranon, Madrid, Spain.
Jianbiao ZhengSequenta Inc., South San Francisco, California.
Martin MoorheadSequenta Inc., South San Francisco, California.
Mark KlingerSequenta Inc., South San Francisco, California.
Bing ZhangDepartment of Pathology, Stanford University School of Medicine, Stanford, California.
Amna WaqarDepartment of Pathology, Stanford University School of Medicine, Stanford, California.
James L ZehnderDepartment of Pathology, Stanford University School of Medicine, Stanford, California.
David B MiklosDivision of Blood and Marrow Transplantation, Department of Medicine, Stanford University School of Medicine, Stanford, California.
Stanford University · USHospital General Universitario Gregorio Marañón · ESUniversity of California, San Francisco · US

Funding

TUMOR SPECIFIC CYTOTOXIC T-LYMPHOCYTES IN BONE MARROW TRANSPLANTATIONP01CA049605 · NCI · STANFORD UNIVERSITY · PI David B. Miklos · 1989 to 2026
$73.3M
Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
NCI NIH HHS 1P030 CA124435-01.NCI NIH HHS P01 CA049605NCI NIH HHS P30 CA124435
6 · The paper itself

Abstract

Minimal residual disease (MRD) quantification is an important predictor of outcome after treatment for acute lymphoblastic leukemia (ALL). Bone marrow ALL burden ≥ 10(-4) after induction predicts subsequent relapse. Likewise, MRD ≥ 10(-4) in bone marrow before initiation of conditioning for allogeneic (allo) hematopoietic cell transplantation (HCT) predicts transplantation failure. Current methods for MRD quantification in ALL are not sufficiently sensitive for use with peripheral blood specimens and have not been broadly implemented in the management of adults with ALL. Consensus-primed immunoglobulin (Ig), T cell receptor (TCR) amplification and high-throughput sequencing (HTS) permit use of a standardized algorithm for all patients and can detect leukemia at 10(-6) or lower. We applied the LymphoSIGHT HTS platform (Sequenta Inc., South San Francisco, CA) to quantification of MRD in 237 samples from 29 adult B cell ALL patients before and after allo-HCT. Using primers for the IGH-VDJ, IGH-DJ, IGK, TCRB, TCRD, and TCRG loci, MRD could be quantified in 93% of patients. Leukemia-associated clonotypes at these loci were identified in 52%, 28%, 10%, 35%, 28%, and 41% of patients, respectively. MRD ≥ 10(-4) before HCT conditioning predicted post-HCT relapse (hazard ratio [HR], 7.7; 95% confidence interval [CI], 2.0 to 30; P = .003). In post-HCT blood samples, MRD ≥10(-6) had 100% positive predictive value for relapse with median lead time of 89 days (HR, 14; 95% CI, 4.7 to 44, P < .0001). The use of HTS-based MRD quantification in adults with ALL offers a standardized approach with sufficient sensitivity to quantify leukemia MRD in peripheral blood. Use of this approach may identify a window for clinical intervention before overt relapse.

Indexed as

AdolescentAdultAgedGenes, T-Cell ReceptorHematopoietic Stem Cell TransplantationHigh-Throughput Nucleotide SequencingHumansImmunoglobulinsMiddle AgedNeoplasm Recurrence, LocalNeoplasm, ResidualPrecursor Cell Lymphoblastic Leukemia-LymphomaPrognosisRetrospective StudiesSurvival AnalysisTransplantation ConditioningImmunoglobulinsAcute lymphoblastic leukemiaAllogeneic hematopoietic cell transplantationHigh-throughput sequencingMinimal residual diseaseNext-generation sequencing

Identifiers

PMID24769317
PMCPMC5259557
OpenAlexW2059785103

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.