Evidence map›Paper›PMID 24767987›Full record

ArticleCell reports2014

Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis.

Nikolai Slavov, Bogdan A Budnik, David Schwab, Edoardo M Airoldi, Alexander van Oudenaarden

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
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  9. Endocrine-disrupting compounds and metabolomic reprogramming in breast cancer.Journal of biochemical and molecular toxicology · 2023
    Review
  10. Article
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  13. Cell reports methods · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Nikolai SlavovDepartments of Physics and Biology and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Statistics and FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands. Electronic address: nslavov@alum.mit.edu.
Bogdan A BudnikDepartment of Statistics and FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
David SchwabDepartment of Physics and Lewis-Sigler Institute, Princeton University, Princeton, NJ 08544, USA.
Edoardo M AiroldiDepartment of Statistics and FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Alexander van OudenaardenDepartments of Physics and Biology and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands. Electronic address: a.vanoudenaarden@hubrecht.eu.
Harvard University · USRoyal Netherlands Academy of Arts and Sciences · NLPrinceton University · US

Funding

TRANS-NETWORK PROJECTSU54CA143874 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VAN OUDENAARDEN, ALEXANDER · 2009 to 2013
$15.1M
Multistability and noise in gene regulatory modulesR01GM068957 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HORVITZ, H ROBERT · 2003 to 2014
$4.6M
Stochastic gene expression in differentiation and developmentDP1OD003936 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VAN OUDENAARDEN, ALEXANDER · 2008 to 2011
$3.4M
Quant. methods for systems-level analyses of regulation & signaling dynamicsR01GM096193 · NIGMS · HARVARD UNIVERSITY · PI AIROLDI, EDOARDO MARIA · 2010 to 2014
$1.1M
Stochastic gene expression in differentiation and developmentDP1CA174420 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VAN OUDENAARDEN, ALEXANDER · 2012 to 2012
$832k
NCI NIH HHS DP1 CA174420NCI NIH HHS U54 CA143874NCI NIH HHS U54CA143874NIGMS NIH HHS R01 GM068957NIGMS NIH HHS R01-GM068957NIGMS NIH HHS R01 GM096193NIGMS NIH HHS R01-GM-096193NIH HHS DP1 OD003936
6 · The paper itself

Abstract

Fermenting glucose in the presence of enough oxygen to support respiration, known as aerobic glycolysis, is believed to maximize growth rate. We observed increasing aerobic glycolysis during exponential growth, suggesting additional physiological roles for aerobic glycolysis. We investigated such roles in yeast batch cultures by quantifying O2 consumption, CO2 production, amino acids, mRNAs, proteins, posttranslational modifications, and stress sensitivity in the course of nine doublings at constant rate. During this course, the cells support a constant biomass-production rate with decreasing rates of respiration and ATP production but also decrease their stress resistance. As the respiration rate decreases, so do the levels of enzymes catalyzing rate-determining reactions of the tricarboxylic-acid cycle (providing NADH for respiration) and of mitochondrial folate-mediated NADPH production (required for oxidative defense). The findings demonstrate that exponential growth can represent not a single metabolic/physiological state but a continuum of changing states and that aerobic glycolysis can reduce the energy demands associated with respiratory metabolism and stress survival.

Indexed as

Energy MetabolismGlycolysisAdenosine TriphosphateBatch Cell Culture TechniquesBiomassCitric Acid CycleMitochondriaNADPProtein Processing, Post-TranslationalRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphateNADPRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID24767987
PMCPMC4049626
OpenAlexW2127736762

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.