Evidence map›Paper›PMID 24766808›Full record

ArticleCell2014

Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources.

Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 793 papers.

0numbers the graph read from it
0cells of the map it votes in
793citing papers in PubMed
49.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

793 citing papers in PubMed, 1,363 citations in OpenAlex.

  1. Exchange dynamics and kinetic control of gene regulation complexes.Nature reviews. Molecular cell biology · 2026
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  11. Contributions of intra- and extracellular antibiotic degradation to collective [Formula: see text]-lactam survival.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  17. Dynamic partitioning shapes thebioRxiv : the preprint server for biology · 2026
    Article
  18. Article
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  20. Article

733 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Gene-Wei LiDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute of Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Center for RNA Systems Biology, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: gene-wei.li@ucsf.edu.
David BurkhardtCalifornia Institute of Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA.
Carol GrossCalifornia Institute of Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Cell and Tissue Biology, University of California, San Francisco, San Francisco, CA 94158, USA.
Jonathan S WeissmanDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute of Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Center for RNA Systems Biology, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: weissman@cmp.ucsf.edu.
QB3 · USUniversity of California, San Francisco · US

Funding

PROJECT 3P50GM102706 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2012 to 2016
$9.5M
Probing the function of translational pausing in bacterial protein synthesisR00GM105913 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LI, GENE-WEI · 2015 to 2017
$747k
Probing the function of translational pausing in bacterial protein synthesisK99GM105913 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LI, GENE-WEI · 2013 to 2014
$180k
Howard Hughes Medical InstituteNIGMS NIH HHS GM105913NIGMS NIH HHS K99 GM105913NIGMS NIH HHS P50 GM102706NIGMS NIH HHS R00 GM105913
6 · The paper itself

Abstract

Quantitative views of cellular functions require precise measures of rates of biomolecule production, especially proteins-the direct effectors of biological processes. Here, we present a genome-wide approach, based on ribosome profiling, for measuring absolute protein synthesis rates. The resultant E. coli data set transforms our understanding of the extent to which protein synthesis is precisely controlled to optimize function and efficiency. Members of multiprotein complexes are made in precise proportion to their stoichiometry, whereas components of functional modules are produced differentially according to their hierarchical role. Estimates of absolute protein abundance also reveal principles for optimizing design. These include how the level of different types of transcription factors is optimized for rapid response and how a metabolic pathway (methionine biosynthesis) balances production cost with activity requirements. Our studies reveal how general principles, important both for understanding natural systems and for synthesizing new ones, emerge from quantitative analyses of protein synthesis.

Indexed as

Protein BiosynthesisBacterial ProteinsEscherichia coliGenome-Wide Association StudyMethionineMultiprotein ComplexesRibosomesSaccharomyces cerevisiaeTranscription FactorsBacterial ProteinsMethionineMultiprotein ComplexesTranscription Factors

Identifiers

PMID24766808
PMCPMC4006352
OpenAlexW2061659241

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.