Evidence map›Paper›PMID 24763700›Full record

SynthesisPloS one2014

New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.

Nadimuthu Vinayagamoorthy, Hae-Jin Hu, Seon-Hee Yim, Seung-Hyun Jung, Jaeseong Jo, Sun Ha Jee, Yeun-Jun Chung

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nadimuthu VinayagamoorthyIntegrated Research Center for Genome Polymorphism, The Catholic University of Korea, College of Medicine, Seoul, Korea; Department of Microbiology, The Catholic University of Korea, College of Medicine, Seoul, Korea.
Hae-Jin HuIntegrated Research Center for Genome Polymorphism, The Catholic University of Korea, College of Medicine, Seoul, Korea; Department of Microbiology, The Catholic University of Korea, College of Medicine, Seoul, Korea.
Seon-Hee YimIntegrated Research Center for Genome Polymorphism, The Catholic University of Korea, College of Medicine, Seoul, Korea; Department of Medical Education, The Catholic University of Korea, College of Medicine, Seoul, Korea.
Seung-Hyun JungIntegrated Research Center for Genome Polymorphism, The Catholic University of Korea, College of Medicine, Seoul, Korea; Department of Microbiology, The Catholic University of Korea, College of Medicine, Seoul, Korea.
Jaeseong JoInstitute of Health Promotion, Graduate School of Public Health, Yonsei University, Seoul, Korea.
Sun Ha JeeInstitute of Health Promotion, Graduate School of Public Health, Yonsei University, Seoul, Korea.
Yeun-Jun ChungIntegrated Research Center for Genome Polymorphism, The Catholic University of Korea, College of Medicine, Seoul, Korea; Department of Microbiology, The Catholic University of Korea, College of Medicine, Seoul, Korea.
Catholic University of Korea · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C-reactive protein (CRP) is a general marker of systemic inflammation and cardiovascular disease (CVD). The genetic contribution to differences in CRP levels remains to be explained, especially in non-European populations. Thus, the aim of this study was to identify genetic loci associated with CRP levels in Korean population. We performed genome-wide association studies (GWAS) using SNPs from 8,529 Korean individuals (7,626 for stage 1 and 903 for stage 2). We also performed pathway analysis. We identified a new genetic locus associated with CRP levels upstream of ARG1 gene (top significant SNP: rs9375813, Pmeta = 2.85×10(-8)), which encodes a key enzyme of the urea cycle counteract the effects of nitric oxide, in addition to known CRP (rs7553007, Pmeta = 1.72×10(-16)) and HNF1A loci (rs2259816, Pmeta = 2.90×10(-10)). When we evaluated the associations between the CRP-related SNPs with cardiovascular disease phenotypes, rs9375813 (ARG1) showed a marginal association with hypertension (P = 0.0440). To identify more variants and pathways, we performed pathway analysis and identified six candidate pathways comprised of genes related to inflammatory processes and CVDs (CRP, HNF1A, PCSK6, CD36, and ABCA1). In addition to the previously reported loci (CRP, HNF1A, and IL6) in diverse ethnic groups, we identified novel variants in the ARG1 locus associated with CRP levels in Korean population and a number of interesting genes related to inflammatory processes and CVD through pathway analysis.

Indexed as

Polymorphism, Single NucleotideArginaseCardiovascular DiseasesC-Reactive ProteinGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInflammationLinkage DisequilibriumPhenotypeRepublic of KoreaArginaseC-Reactive Protein

Identifiers

PMID24763700
PMCPMC3999194
OpenAlexW1973821988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.