Evidence map›Paper›PMID 24763368›Full record

ArticleThe ISME journal2014

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Nadia Khelifi, Oulfat Amin Ali, Philippe Roche, Vincent Grossi, Céline Brochier-Armanet, Odile Valette, Bernard Ollivier, Alain Dolla, Agnès Hirschler-Réa

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 94 citations in OpenAlex.

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  20. Methanogenic Degradation of LongApplied and environmental microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Nadia KhelifiAix Marseille Université, CNRS, Université de Toulon, IRD, MIO UM 110, Marseille, France.
Oulfat Amin AliAix Marseille Université, CNRS, Université de Toulon, IRD, MIO UM 110, Marseille, France.
Philippe RocheCentre de Recherche en Cancérologie de Marseille (CRCM), CNRS UMR 7258, INSERM U 1068, Institut Paoli-Calmettes, Aix Marseille Université, Marseille, France.
Vincent GrossiUniversité de Lyon, Université Lyon 1, CNRS, UMR 5276, Laboratoire de Géologie de Lyon, Villeurbanne, France.
Céline Brochier-ArmanetUniversité de Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France.
Odile ValetteAix Marseille Université, CNRS, LCB UMR 7283, Marseille, France.
Bernard OllivierAix Marseille Université, CNRS, Université de Toulon, IRD, MIO UM 110, Marseille, France.
Alain DollaAix Marseille Université, CNRS, LCB UMR 7283, Marseille, France.
Agnès Hirschler-RéaAix Marseille Université, CNRS, Université de Toulon, IRD, MIO UM 110, Marseille, France.
Centre National de la Recherche Scientifique · FRAix-Marseille Université · FRInserm · FRLaboratoire de Biométrie et Biologie Evolutive · FRUniversity of Carthage · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermophilic sulfate-reducing archaeon Archaeoglobus fulgidus strain VC-16 (DSM 4304), which is known to oxidize fatty acids and n-alkenes, was shown to oxidize saturated hydrocarbons (n-alkanes in the range C10-C21) with thiosulfate or sulfate as a terminal electron acceptor. The amount of n-hexadecane degradation observed was in stoichiometric agreement with the theoretically expected amount of thiosulfate reduction. One of the pathways used by anaerobic microorganisms to activate alkanes is addition to fumarate that involves alkylsuccinate synthase as a key enzyme. A search for genes encoding homologous enzymes in A. fulgidus identified the pflD gene (locus-tag AF1449) that was previously annotated as a pyruvate formate lyase. A phylogenetic analysis revealed that this gene is of bacterial origin and was likely acquired by A. fulgidus from a bacterial donor through a horizontal gene transfer. Based on three-dimensional modeling of the corresponding protein and molecular dynamic simulations, we hypothesize an alkylsuccinate synthase activity for this gene product. The pflD gene expression was upregulated during the growth of A. fulgidus on an n-alkane (C16) compared with growth on a fatty acid. Our results suggest that anaerobic alkane degradation in A. fulgidus may involve the gene pflD in alkane activation through addition to fumarate. These findings highlight the possible importance of hydrocarbon oxidation at high temperatures by A. fulgidus in hydrothermal vents and the deep biosphere.

Indexed as

AlkanesAnaerobiosisArchaeal ProteinsArchaeoglobus fulgidusFatty AcidsHot TemperatureOxidation-ReductionPhylogenySulfatesAlkanesArchaeal ProteinsFatty Acidsn-hexadecaneSulfates

Identifiers

PMID24763368
PMCPMC4992073
OpenAlexW2003124134

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.