Evidence map›Paper›PMID 24763198›Full record

ArticlePloS one2014

Automated high-throughput quantification of mitotic spindle positioning from DIC movies of Caenorhabditis embryos.

David Cluet, Pierre-Nicolas Stébé, Soizic Riche, Martin Spichty, Marie Delattre

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

David CluetLaboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.
Pierre-Nicolas StébéLaboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.
Soizic RicheLaboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.
Martin SpichtyLaboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.
Marie DelattreLaboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.
École Normale Supérieure de Lyon · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitotic spindle is a microtubule-based structure that elongates to accurately segregate chromosomes during anaphase. Its position within the cell also dictates the future cell cleavage plan, thereby determining daughter cell orientation within a tissue or cell fate adoption for polarized cells. Therefore, the mitotic spindle ensures at the same time proper cell division and developmental precision. Consequently, spindle dynamics is the matter of intensive research. Among the different cellular models that have been explored, the one-cell stage C. elegans embryo has been an essential and powerful system to dissect the molecular and biophysical basis of spindle elongation and positioning. Indeed, in this large and transparent cell, spindle poles (or centrosomes) can be easily detected from simple DIC microscopy by human eyes. To perform quantitative and high-throughput analysis of spindle motion, we developed a computer program ACT for Automated-Centrosome-Tracking from DIC movies of C. elegans embryos. We therefore offer an alternative to the image acquisition and processing of transgenic lines expressing fluorescent spindle markers. Consequently, experiments on large sets of cells can be performed with a simple setup using inexpensive microscopes. Moreover, analysis of any mutant or wild-type backgrounds is accessible because laborious rounds of crosses with transgenic lines become unnecessary. Last, our program allows spindle detection in other nematode species, offering the same quality of DIC images but for which techniques of transgenesis are not accessible. Thus, our program also opens the way towards a quantitative evolutionary approach of spindle dynamics. Overall, our computer program is a unique macro for the image- and movie-processing platform ImageJ. It is user-friendly and freely available under an open-source licence. ACT allows batch-wise analysis of large sets of mitosis events. Within 2 minutes, a single movie is processed and the accuracy of the automated tracking matches the precision of the human eye.

Indexed as

SoftwareAnimalsAutomation, LaboratoryCaenorhabditis elegansCentrosomeEmbryo, NonmammalianHumansMicroscopy, PolarizationMicroscopy, VideoSpindle Apparatus

Identifiers

PMID24763198
PMCPMC3998942
OpenAlexW2020744586

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.