Evidence map›Paper›PMID 24763107›Full record

ArticleMolecular & cellular proteomics : MCP2014

Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).

Alejandro Carpy, Karsten Krug, Sabine Graf, André Koch, Sasa Popic, Silke Hauf, Boris Macek

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 164 citations in OpenAlex.

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  14. bioRxiv : the preprint server for biology · 2024
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alejandro CarpyFrom the ‡ Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany.
Karsten KrugFrom the ‡ Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany.
Sabine Graf¶Friedrich Miescher Laboratory of the Max Planck Society, Tuebingen, 72076, Germany.
André Koch¶Friedrich Miescher Laboratory of the Max Planck Society, Tuebingen, 72076, Germany.
Sasa PopicFrom the ‡ Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany.
Silke Hauf¶Friedrich Miescher Laboratory of the Max Planck Society, Tuebingen, 72076, Germany.
Boris MacekFrom the ‡ Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany, boris.macek@uni-tuebingen.de.
University of Tübingen · DEFriedrich Miescher Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To quantify cell cycle-dependent fluctuations on a proteome-wide scale, we performed integrative analysis of the proteome and phosphoproteome during the four major phases of the cell cycle in Schizosaccharomyces pombe. In highly synchronized cells, we identified 3753 proteins and 3682 phosphorylation events and relatively quantified 65% of the data across all phases. Quantitative changes during the cell cycle were infrequent and weak in the proteome but prominent in the phosphoproteome. Protein phosphorylation peaked in mitosis, where the median phosphorylation site occupancy was 44%, about 2-fold higher than in other phases. We measured copy numbers of 3178 proteins, which together with phosphorylation site stoichiometry enabled us to estimate the absolute amount of protein-bound phosphate, as well as its change across the cell cycle. Our results indicate that 23% of the average intracellular ATP is utilized by protein kinases to phosphorylate their substrates to drive regulatory processes during cell division. Accordingly, we observe that phosphate transporters and phosphate-metabolizing enzymes are phosphorylated and therefore likely to be regulated in mitosis.

Indexed as

Adenosine TriphosphateCell Culture TechniquesCell CycleGene Expression Regulation, FungalMass SpectrometryPhosphorylationProteomeProteomicsSchizosaccharomycesSchizosaccharomyces pombe ProteinsAdenosine TriphosphateProteomeSchizosaccharomyces pombe Proteins

Identifiers

PMID24763107
PMCPMC4125727
OpenAlexW2108675105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.