Evidence map›Paper›PMID 24760884›Full record

ArticleJournal of virology2014

The human fetal glial cell line SVG p12 contains infectious BK polyomavirus.

Stian Henriksen, Garth D Tylden, Alexis Dumoulin, Biswa Nath Sharma, Hans H Hirsch, Christine Hanssen Rinaldo

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Stian HenriksenDepartment of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway.
Garth D TyldenDepartment of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway Department of Medical Biology, UiT The Arctic University of Norway, Tromsø, Norway.
Alexis DumoulinTransplantation & Clinical Virology, Department of Biomedicine (Haus Petersplatz), University of Basel, Basel, Switzerland.
Biswa Nath SharmaDepartment of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway Department of Medical Biology, UiT The Arctic University of Norway, Tromsø, Norway.
Hans H HirschTransplantation & Clinical Virology, Department of Biomedicine (Haus Petersplatz), University of Basel, Basel, Switzerland Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland.
Christine Hanssen RinaldoDepartment of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway Metabolic and Renal Research Group, UiT The Arctic University of Norway, Tromsø, Norway christine.rinaldo@unn.no.
UiT The Arctic University of Norway · NOUniversity Hospital of North Norway · NOUniversity Hospital of Basel · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe human fetal glial cell line SVG was generated in 1985 by transfecting primary fetal brain cells with a plasmid containing an origin-defective mutant of simian virus 40 (SV40). The cells, which express SV40 large T-antigen, support the replication of human JC polyomavirus (JCPyV) and have been used for JCPyV studies but also for other studies in which cells of neural origin were desirable. We intended to use the SVG p12 cells from ATCC for antiviral drug studies with JCPyV. However, during initial experiments, immunofluorescence microscopy controls unexpectedly revealed cells expressing the late viral proteins VP1, VP2/VP3, and agno. This was confirmed by Western blotting. Since our agnoprotein antiserum is specific for BKPyV agnoprotein, infection with BKPyV was suspected. Indeed, specific BKPyV PCR of SVG p12 supernatants revealed a viral load of >1 × 10(10) genomic equivalents/ml. Negative-staining electron microscopy showed characteristic polyomavirus virions, and infectious BKPyV was transmitted from SVG p12 supernatant to other cells. Long-range PCR covering the viral genome, followed by DNA sequencing, identified BKPyV strain UT as well as deletion derivatives. This was confirmed by next-generation sequencing. JCPyV (MAD-4) was found to infect apparently uninfected and BKPyV-infected SVG p12 cells. In total, 4 vials from 2 different ATCC lots of SVG p12 cells dating back to 2006 contained BKPyV, whereas the subclone SVG-A was negative. In conclusion, SVG p12 cells from ATCC contain infectious BKPyV. This may have affected results and interpretations of previous studies, and caution should be taken in future experiments. IMPORTANCE: This work reveals that one of the most frequently used cell lines for JC polyomavirus (JCPyV) research, the SV40-immortalized human fetal glial cell line SVG p12 obtained directly from ATCC, contains infectious BK polyomavirus (BKPyV) of strain UT and a spectrum of defective mutants. Strain UT has been previously found in urine and in tumors of different patients but is also frequently used for research. It is therefore not clear if BKPyV was present in the brain tissue used to generate the cell line or if this is a contamination. Although productive JCPyV infection of SVG cells was not dependent on prior BKPyV infection, the unnoticed presence of BKPyV may have influenced the results of studies using these cells. The interpretation of past results should therefore be reconsidered and cells tested for BKPyV before new studies are initiated. The frequently used subclone SVG-A did not contain BKPyV and could be a useful substitute.

Indexed as

BK VirusBlotting, WesternCells, CulturedDNA, ViralFetusFluorescent Antibody TechniqueHigh-Throughput Nucleotide SequencingHumansJC VirusNeurogliaPolyomavirus InfectionsReal-Time Polymerase Chain ReactionTumor Virus InfectionsViral Regulatory and Accessory ProteinsViroporin ProteinsVirus Replicationagnoprotein, polyomavirusDNA, ViralViral Regulatory and Accessory ProteinsViroporin Proteins

Identifiers

PMID24760884
PMCPMC4054427
OpenAlexW2156144226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.