Evidence map›Paper›PMID 24760390›Full record

ArticleG3 (Bethesda, Md.)2014

Two genomic regions contribute disproportionately to geographic differentiation in wild barley.

Zhou Fang, Ana M Gonzales, Michael T Clegg, Kevin P Smith, Gary J Muehlbauer, Brian J Steffenson, Peter L Morrell

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Haplotype structure in commercial maize breeding programs in relation to key founder lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Geographic mosaics and changing rates of cereal domestication.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhou FangDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108.
Ana M GonzalesDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Michael T CleggDepartment of Ecology and Evolutionary Biology, University of California, Irvine, California 92697.
Kevin P SmithDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Gary J MuehlbauerDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108.
Brian J SteffensonDepartment of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108.
Peter L MorrellDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 pmorrell@umn.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic differentiation in natural populations is driven by geographic distance and by ecological or physical features within and between natural habitats that reduce migration. The primary population structure in wild barley differentiates populations east and west of the Zagros Mountains. Genetic differentiation between eastern and western populations is uneven across the genome and is greatest on linkage groups 2H and 5H. Genetic markers in these two regions demonstrate the largest difference in frequency between the primary populations and have the highest informativeness for assignment to each population. Previous cytological and genetic studies suggest there are chromosomal structural rearrangements (inversions or translocations) in these genomic regions. Environmental association analyses identified an association with both temperature and precipitation variables on 2H and with precipitation variables on 5H.

Indexed as

Genome, PlantEnvironmentGenetics, PopulationGenetic VariationGenotypeHaplotypesHordeumPolymorphism, Single NucleotidePrincipal Component AnalysisRNASequence Analysis, RNARNAchromosome structural variationenvironmental associationlocal adaptationpopulation structurewild barley

Identifiers

PMID24760390
PMCPMC4455769

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.