ArticlePloS one2014
Genome-wide analysis of the bZIP transcription factors in cucumber.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.
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Who cites it
108 citing papers in PubMed, 220 citations in OpenAlex.
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- Genome-Wide Identification and Analysis of bZIP Transcription Factors inInternational journal of molecular sciences · 2025Article
- Unraveling the genetic mechanisms of waterlogging stress through the leaf metabolome of a sweet corn panel.BMC plant biology · 2025Article
- Molecular evolution of the bZIP family in allotetraploid Gossypium and GhbZIP017 function under drought stress.Plant cell reports · 2025Article
- Genome-Wide Identification and Expression Analysis of the LbDof Transcription Factor Family Genes inPlants (Basel, Switzerland) · 2025Article
- Genome-wide identification and expression analysis of TaFDL gene family responded to vernalization in wheat (Triticum aestivum L.).BMC genomics · 2025Article
- Genome-wide identification of bZIP transcription factors in 12 Rosaceae species and modeling of novel mechanisms of EjbZIPs response to salt stress.The plant genome · 2024Article
- Systematic analysis of bZIP gene family in Suaeda australis reveal their roles under salt stress.BMC plant biology · 2024Article
- Genome Assembly and Structural Variation Analysis ofPlants (Basel, Switzerland) · 2024Article
- In silico analysis identified bZIP transcription factors genes responsive to abiotic stress in Alfalfa (Medicago sativa L.).BMC genomics · 2024Article
- An Accurate Representation of the Number of bZIP Transcription Factors in theCurrent issues in molecular biology · 2024Article
- PfbZIP85 Transcription Factor Mediates ω-3 Fatty Acid-Enriched Oil Biosynthesis by Down-RegulatingInternational journal of molecular sciences · 2024Article
- Genome-Wide Identification and Expression Profiling of the ABF Transcription Factor Family in Wheat (International journal of molecular sciences · 2024Article
- Genome-Wide Identification and Expression Analysis Reveal bZIP Transcription Factors Mediated Hormones That Functions during Early Somatic Embryogenesis inPlants (Basel, Switzerland) · 2024Article
- Genome-wide analysis of bZIP gene family members in Pleurotus ostreatus, and potential roles of PobZIP3 in development and the heat stress response.Microbial biotechnology · 2024Article
- Genome-wide analysis and expression profile of the bZIP gene family inFrontiers in plant science · 2024Article
- Identification and expression analysis of bZIP transcription factors inFrontiers in genetics · 2024Article
- Genome-wide identification, characterization and expression analysis of theFrontiers in plant science · 2024Article
- Genomic characterization of bZIP gene family and patterns of gene regulation onFrontiers in genetics · 2024Article
- Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd.BMC plant biology · 2023Article
48 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
bZIP proteins are one of the largest transcriptional regulators playing crucial roles in plant development, physiological processes, and biotic/abiotic stress responses. Despite the availability of recently published draft genome sequence of Cucumis sativus, no comprehensive investigation of these family members has been presented for cucumber. We have identified 64 bZIP transcription factor-encoding genes in the cucumber genome. Based on structural features of their encoded proteins, CsbZIP genes could be classified into 6 groups. Cucumber bZIP genes were expanded mainly by segmental duplication rather than tandem duplication. Although segmental duplication rate of the CsbZIP genes was lower than that of Arabidopsis, rice and sorghum, it was observed as a common expansion mechanism. Some orthologous relationships and chromosomal rearrangements were observed according to comparative mapping analysis with other species. Genome-wide expression analysis of bZIP genes indicated that 64 CsbZIP genes were differentially expressed in at least one of the ten sampled tissues. A total of 4 CsbZIP genes displayed higher expression values in leaf, flowers and root tissues. The in silico micro-RNA (miRNA) and target transcript analyses identified that a total of 21 CsbZIP genes were targeted by 38 plant miRNAs. CsbZIP20 and CsbZIP22 are the most targeted by miR165 and miR166 family members, respectively. We also analyzed the expression of ten CsbZIP genes in the root and leaf tissues of drought-stressed cucumber using quantitative RT-PCR. All of the selected CsbZIP genes were measured as increased in root tissue at 24th h upon PEG treatment. Contrarily, the down-regulation was observed in leaf tissues of all analyzed CsbZIP genes. CsbZIP12 and CsbZIP44 genes showed gradual induction of expression in root tissues during time points. This genome-wide identification and expression profiling provides new opportunities for cloning and functional analyses, which may be used in further studies for improving stress tolerance in plants.
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