Evidence map›Paper›PMID 24759937›Full record

ArticleThe Analyst2014

DNA hybridization detection with 100 zM sensitivity using piezoelectric plate sensors with an improved noise-reduction algorithm.

Ceyhun E Kirimli, Wei-Heng Shih, Wan Y Shih

Abstract read
In one paragraph

Article in The Analyst, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Ceyhun E KirimliLakehead University, Department of Chemistry, Thunder Bay, Canada. ckirimli@lakeheadu.ca.
Wei-Heng Shih
Wan Y Shih
Drexel University · USLakehead University · CA

Funding

Rapid, Accurate, and Low-Cost Stool Clostridium difficile Genetic TestR41AI112224 · NIAID · LENIMA FIELD DIAGNOSTICS, LLC · PI SHIH, WAN Y. · 2014 to 2014
$300k
A Low-Cost Portable Multiplex Serum Molecular Test for HBV and HCV DetectionR41AI120445 · NIAID · LENIMA FIELD DIAGNOSTICS, LLC · PI SHIH, WAN Y. · 2015 to 2015
$300k
NIAID NIH HHS R41 AI112224NIAID NIH HHS R41 AI120445
6 · The paper itself

Abstract

We have examined real-time, in situ hybridization detection of target DNA (tDNA) in a buffer solution and in urine using 8 μm-thick lead magnesium niobate-lead titanate (PMN-PT) piezoelectric plate sensors (PEPSs) about 1.1-1.2 mm long and 0.45 mm wide with improved 3-mercaptopropyltrimethoxysilane (MPS) insulation and a new multiple-parabola (>50) resonance peak position fitting algorithm. With probe DNA (pDNA) immobilized on the PEPS surface and by monitoring the first width extension mode (WEM) resonance frequency shift we detected tDNA in real time at concentration as low as 1 × 10(-19) M in urine (100 zM) with a signal to noise ratio (SNR) of 13 without DNA isolation and amplification at room temperature in 30 min. The present multiple-parabola fitting algorithm increased the detection of SNR by about 10 times compared to those obtained using the raw data and by about 5 times compared to those obtained using single parabola fitting. The detection was validated by in situ follow-up detection and subsequent visualization of fluorescent reporter microspheres (FRMs) coated with reporter DNA complementary to the tDNA but different from the probe pDNA.

Indexed as

AlgorithmsNucleic Acid HybridizationDNALimit of DetectionSignal-To-Noise RatioDNA

Identifiers

PMID24759937
PMCPMC4971884
OpenAlexW2135150928

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.