ArticlePloS one2014
De novo transcriptome and small RNA analyses of two amorphophallus species.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 26 citations in OpenAlex.
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- Genomic, transcriptomic and metabolomic analyses ofFrontiers in plant science · 2024Article
- Characteristics of Amorphophallus konjac as indicated by its genome.Scientific reports · 2023Article
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- Comparative analysis of buds transcriptome and identification of two florigen gene AkFTs in Amorphophallus konjac.Scientific reports · 2022Article
- A chromosome-level genome assembly ofComputational and structural biotechnology journal · 2022Article
- Functional characterization of a starch synthesis-related genePlant signaling & behavior · 2020Article
- First report on DNA content of three species ofJournal of genetics · 2020Article
- Comparative analysis of complete chloroplast genome sequences of four major Amorphophallus species.Scientific reports · 2019Article
- Mechanistic insights from plant heteromannan synthesis in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Genome-wide discovery of tissue-specific miRNAs in clusterbean (Cyamopsis tetragonoloba) indicates their association with galactomannan biosynthesis.Plant biotechnology journal · 2018Article
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- The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution.Scientific reports · 2016Article
- Article
Corrections and comments
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Authors and funding
7 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Konjac is one of the most important glucomannan crops worldwide. The breeding and genomic researches are largely limited by the genetic basis of Amorphophallus. In this study, the transcriptomes of A. konjac and A. bulbifer were constructed using a high-throughput Illumina sequencing platform. All 108,651 unigenes with average lengths of 430 nt in A. konjac and 119,678 unigenes with average lengths of 439 nt were generated from 54,986,020 reads and 52,334,098 reads after filtering and assembly, respectively. A total of 54,453 transcripts in A. konjac and 55,525 in A. bulbifier were annotated by comparison with Nr, Swiss-Prot, KEGG, and COG databases after removing exogenous contaminated sequences. A total of 80,332 transcripts differentially expressed between A. konjac and A. bulbifer. The majority of the genes that are associated with konjac glucomannan biosynthetic pathway were identified. Besides, the small RNAs in A. konjac leaves were also obtained by deep sequencing technology. All of 5,499,903 sequences of small RNAs were obtained with the length range between 18 and 30 nt. The potential targets for the miRNAs were also predicted according to the konjac transcripts. Our study provides a systematic overview of the konjac glucomannan biosynthesis genes that are involved in konjac leaves and should facilitate further understanding of the crucial roles of carbohydrate synthesis and other important metabolism pathways in Amorphophallus.
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