Evidence map›Paper›PMID 24759811›Full record

ArticlePloS one2014

Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.

Takayuki Yokoo, Hiroki Saito, Yoshihiro Yoshitake, Quan Xu, Takehito Asami, Takuji Tsukiyama, Masayoshi Teraishi, Yutaka Okumoto, Takatoshi Tanisaka

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 77 citations in OpenAlex.

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  10. Rapid excavating aMolecular breeding : new strategies in plant improvement · 2021
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  11. Review
  12. Article
  13. Review
  14. Article
  15. Understanding epigenomics based on the rice model.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. The gymnastics of epigenomics in rice.Plant cell reports · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Takayuki YokooGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Hiroki SaitoGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Yoshihiro YoshitakeGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Quan XuGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Takehito AsamiGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Takuji TsukiyamaGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Masayoshi TeraishiGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Yutaka OkumotoGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Takatoshi TanisakaGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Floral transition from the vegetative to the reproductive growth phase is a major change in the plant life cycle and a key factor in reproductive success. In rice (Oryza sativa L.), a facultative short-day plant, numerous flowering time and flower formation genes that control floral transition have been identified and their physiological effects and biochemical functions have been clarified. In the present study, we used a Se14-deficient mutant line (HS112) and other flowering mutant lines to investigate the photoperiodic response, chromosomal location and function in the photoperiod sensitivity of the Se14 gene. We also studied the interactive effects of this locus with other crucial flowering time genes. We found that Se14 is independent of the known photoperiod-sensitive genes, such as Hd1 and Ghd7, and is identical to Os03g0151300, which encodes a Jumonji C (JmjC) domain-containing protein. Expression analysis revealed that the expressions of RFT1, a floral initiator known as a "florigen-like gene", and Ehd1 were up-regulated in HS112, whereas this up-regulation was not observed in the original variety of 'Gimbozu'. ChIP assays of the methylation states of histone H3 at lysine 4 (H3K4) revealed that the trimethylated H3K4 in the promoter region of the RFT1 chromatin was significantly increased in HS112. We conclude that Se14 is a novel photoperiod-sensitivity gene that has a suppressive effect on floral transition (flowering time) under long day-length conditions through the modification of chromatin structure by H3K4me3 demethylation in the promoter region of RFT1.

Indexed as

Amino Acid SequenceChromosomes, PlantFlowersGene Expression Regulation, PlantHistonesJumonji Domain-Containing Histone DemethylasesMethylationMolecular Sequence DataOryzaPhotoperiodPlant ProteinsPromoter Regions, GeneticSequence AlignmentHistonesJumonji Domain-Containing Histone DemethylasesPlant Proteins

Identifiers

PMID24759811
PMCPMC3997562
OpenAlexW2034574526

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.