Evidence map›Paper›PMID 24759092›Full record

ArticleRNA (New York, N.Y.)2014

The Streptococcus suis transcriptional landscape reveals adaptation mechanisms in pig blood and cerebrospinal fluid.

Zongfu Wu, Chunyan Wu, Jing Shao, Zhenzhen Zhu, Weixue Wang, Wenwei Zhang, Min Tang, Na Pei, Hongjie Fan, Jiguang Li and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.

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  15. Review
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  17. Role of Metabolic Adaptation ofPathogens (Basel, Switzerland) · 2023
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Zongfu WuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Chunyan WuBGI-Shenzhen, Shenzhen 518083, China.
Jing ShaoCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Zhenzhen ZhuBGI-Shenzhen, Shenzhen 518083, China.
Weixue WangCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Wenwei ZhangBGI-Shenzhen, Shenzhen 518083, China.
Min TangCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Na PeiBGI-Shenzhen, Shenzhen 518083, China.
Hongjie FanCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou 225009, China.
Jiguang LiBGI-Shenzhen, Shenzhen 518083, China.
Huochun YaoCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Hongwei GuJiangsu Engineering Research Center for microRNA Biology and Biotechnology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210093, China.
Xun XuBGI-Shenzhen, Shenzhen 518083, China.
Chengping LuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, China Key Lab of Animal Bacteriology, Ministry of Agriculture, Nanjing 210095, China OIE Reference Laboratory for Swine Streptococcosis, Nanjing 210095, China.
Nanjing Agricultural University · CNBGI Group (China) · CNNanjing University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus suis (SS) is an important pathogen of pigs, and it is also recognized as a zoonotic agent for humans. SS infection may result in septicemia or meningitis in the host. However, little is known about genes that contribute to the virulence process and survival within host blood or cerebrospinal fluid (CSF). Small RNAs (sRNA) have emerged as key regulators of virulence in several bacteria, but they have not been investigated in SS. Here, using a differential RNA-sequencing approach and RNAs from SS strain P1/7 grown in rich medium, pig blood, or CSF, we present the SS genome-wide map of 793 transcriptional start sites and 370 operons. In addition to identifying 29 sRNAs, we show that five sRNA deletion mutants attenuate SS virulence in a zebrafish infection model. Homology searches revealed that 10 sRNAs were predicted to be present in other pathogenic Streptococcus species. Compared with wild-type strain P1/7, sRNAs rss03, rss05, and rss06 deletion mutants were significantly more sensitive to killing by pig blood. It is possible that rss06 contributes to SS virulence by indirectly activating expression of SSU0308, a virulence gene encoding a zinc-binding lipoprotein. In blood, genes involved in the synthesis of capsular polysaccharide (CPS) and subversion of host defenses were up-regulated. In contrast, in CSF, genes for CPS synthesis were down-regulated. Our study is the first analysis of SS sRNAs involved in virulence and has both improved our understanding of SS pathogenesis and increased the number of sRNAs known to play definitive roles in bacterial virulence.

Indexed as

AnimalsBloodCerebrospinal FluidGenome-Wide Association StudyOperonRNA, BacterialSequence DeletionStreptococcal InfectionsStreptococcus suisSwineTranscription, GeneticUp-RegulationVirulenceZebrafishRNA, Bacterialdifferential RNA-seqsmall RNAsStreptococcus suisTSS mapvirulence

Identifiers

PMID24759092
PMCPMC4024642
OpenAlexW2142362917

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.