ArticleMolecules (Basel, Switzerland)2014
Development of simple sequence repeat (SSR) markers of sesame (Sesamum indicum) from a genome survey.
Article in Molecules (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Article
- Sesame, an Underutilized Oil Seed Crop: Breeding Achievements and Future Challenges.Plants (Basel, Switzerland) · 2024Review
- Characterization and development of transcriptome-derived novel EST-SSR markers to assess genetic diversity in3 Biotech · 2023Article
- Omics technologies towards sesame improvement: a review.Molecular biology reports · 2023Review
- Genome survey sequencing of common vetch (Vicia sativa L.) and genetic diversity analysis of Chinese germplasm with genomic SSR markers.Molecular biology reports · 2022Article
- Genome-wide association study and its applications in the non-model crop Sesamum indicum.BMC plant biology · 2021Review
- Genetic Variability and Population Structure of Ethiopian Sesame (Plants (Basel, Switzerland) · 2021Article
- Identifying Traits Associated With Terminal Drought Tolerance in Sesame (Frontiers in plant science · 2021Article
- Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis.Scientific reports · 2020Article
- Comparative analyses of simple sequence repeats (SSRs) in 23 mosquito species genomes: Identification, characterization and distribution (Diptera: Culicidae).Insect science · 2019Article
- Genome survey and development of 18 microsatellite markers to assess genetic diversity in Spondias tuberosa Arruda Câmara (Anacardiaceae) and cross-amplification in congeneric species.Molecular biology reports · 2019Article
- Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars.Plant biotechnology journal · 2019Article
- Article
- Candidate genes of flavonoid biosynthesis in Selaginella bryopteris (L.) Baker identified by RNA-Seq.Functional & integrative genomics · 2018Article
- Genetic dissection and fine mapping of a novel dt gene associated with determinate growth habit in sesame.BMC genetics · 2018Article
- Cytological characterization and molecular mapping of a novel recessive genic male sterility in sesame (Sesamum indicum L.).PloS one · 2018Article
- Development of Genome-Wide SSR Markers from Angelica gigas Nakai Using Next Generation Sequencing.Genes · 2017Article
- Development of an SSR-based genetic map in sesame and identification of quantitative trait loci associated with charcoal rot resistance.Scientific reports · 2017Article
- SesameFG: an integrated database for the functional genomics of sesame.Scientific reports · 2017Article
- Comparative assessment of genetic diversity in Sesamum indicum L. using RAPD and SSR markers.3 Biotech · 2017Article
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Authors and funding
8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Sesame (Sesamum indicum), an important oil crop, is widely grown in tropical and subtropical regions. It provides part of the daily edible oil allowance for almost half of the world's population. A limited number of co-dominant markers has been developed and applied in sesame genetic diversity and germplasm identity studies. Here we report for the first time a whole genome survey used to develop simple sequence repeat (SSR) markers and to detect the genetic diversity of sesame germplasm. From the initial assembled sesame genome, 23,438 SSRs (≥5 repeats) were identified. The most common repeat motif was dinucleotide with a frequency of 84.24%, followed by 13.53% trinucleotide, 1.65% tetranucleotide, 0.3% pentanucleotide and 0.28% hexanucleotide motifs. From 1500 designed and synthesised primer pairs, 218 polymorphic SSRs were developed and used to screen 31 sesame accessions that from 12 countries. STRUCTURE and phylogenetic analyses indicated that all sesame accessions could be divided into two groups: one mainly from China and another from other countries. Cluster analysis classified Chinese major sesame varieties into three groups. These novel SSR markers are a useful tool for genetic linkage map construction, genetic diversity detection, and marker-assisted selective sesame breeding.
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