Evidence map›Paper›PMID 24756002›Full record

ArticleEpigenetics2014

Correlation of DNA methylation levels in blood and saliva DNA in young girls of the LEGACY Girls study.

Hui-Chen Wu, Qiao Wang, Wendy K Chung, Irene L Andrulis, Mary B Daly, Esther M John, Theresa H M Keegan, Julia Knight, Angela R Bradbury, Maya A Kappil and 3 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in Epigenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

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  15. Clinical epigenetics · 2018
    Article
  16. Review
  17. Thorax · 2017
    Article
  18. Article
  19. Dietary intake is associated with respiratory health outcomes and DNA methylation in children with asthma.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2017
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 3 countries.

Hui-Chen WuDepartment of Epidemiology; Mailman School of Public Health of Columbia University; New York, NY USA; Department of Environmental Health Sciences; Mailman School of Public Health of Columbia University; New York, NY USA.
Qiao WangDepartment of Environmental Health Sciences; Mailman School of Public Health of Columbia University; New York, NY USA.
Wendy K ChungDepartments of Pediatrics and Medicine; Columbia University Medical Center; New York, NY USA.
Irene L AndrulisLunenfeld-Tanenbaum Research Institute of Mount Sinai Hospital; Toronto, ON Canada; Departments of Molecular Genetics and Laboratory Medicine and Pathobiology; University of Toronto; Toronto, ON Canada.
Mary B DalyDepartment of Clinical Genetics; Fox Chase Cancer Center; Fremont, CA USA.
Esther M JohnCancer Prevention Institute of California; Fremont, CA USA; Division of Epidemiology; Department of Health Research & Policy; Stanford Cancer Institute, Stanford University School of Medicine; Stanford, CA USA.
Theresa H M KeeganCancer Prevention Institute of California; Fremont, CA USA; Division of Epidemiology; Department of Health Research & Policy; Stanford Cancer Institute, Stanford University School of Medicine; Stanford, CA USA.
Julia KnightLunenfeld-Tanenbaum Research Institute of Mount Sinai Hospital; Toronto, ON Canada; Dalla Lana School of Public Health; University of Toronto, TO Canada.
Angela R BradburyDepartment of Medicine and Hematology/Oncology; Perelman School of Medicine; University of Pennsylvania; Philadelphia, PA USA; Department of Medical Ethics and Health Policy; Perelman School of Medicine; University of Pennsylvania; Philadelphia, PA USA.
Maya A KappilDepartment of Environmental Health Sciences; Mailman School of Public Health of Columbia University; New York, NY USA.
Irina GurvichDepartment of Environmental Health Sciences; Mailman School of Public Health of Columbia University; New York, NY USA.
Regina M SantellaHerbert Irving Comprehensive Cancer Center; Columbia University Medical Center; New York, NY USA; Department of Environmental Health Sciences; Mailman School of Public Health of Columbia University; New York, NY USA.
Mary Beth TerryDepartment of Epidemiology; Mailman School of Public Health of Columbia University; New York, NY USA; Herbert Irving Comprehensive Cancer Center; Columbia University Medical Center; New York, NY USA; Imprints Center; Columbia University Medical Center; New York, NY USA.
Columbia University · USColumbia University Irving Medical Center · USNew York Proton Center · USDepartment of Health ResearchFox Chase Cancer Center · USHerbert Irving Comprehensive Cancer CenterSinai Hospital · USStanford University · USUniversity of Pennsylvania · USUniversity of Toronto · CA

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
LEGACY: A Cohort of Youth in Families from the Breast Cancer Family RegistryR01CA138638 · NCI · CANCER PREVENTION INSTIT OF CALIFORNIA · PI JOHN, ESTHER M. · 2011 to 2015
$3.6M
LEGACY: A Cohort of Youth in Families from the Breast Cancer Family RegistryR01CA138819 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI BRADBURY, ANGELA R., DALY, MARY BERYL · 2011 to 2015
$3.3M
LEGACY: A cohort of youth in families from the Breast Cancer Family RegistryR01CA138822 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TERRY, MARY BETH · 2011 to 2015
$3.0M
NCI NIH HHS P30 CA013696NCI NIH HHS P30 CA016520NCI NIH HHS R01 CA138638NCI NIH HHS R01 CA138819NCI NIH HHS R01 CA138822NCI NIH HHS R01CA138822NIEHS NIH HHS P30 ES009089
6 · The paper itself

Abstract

Many epidemiologic studies of environmental exposures and disease susceptibility measure DNA methylation in white blood cells (WBC). Some studies are also starting to use saliva DNA as it is usually more readily available in large epidemiologic studies. However, little is known about the correlation of methylation between WBC and saliva DNA. We examined DNA methylation in three repetitive elements, Sat2, Alu, and LINE-1, and in four CpG sites, including AHRR (cg23576855, cg05575921), cg05951221 at 2q37.1, and cg11924019 at CYP1A1, in 57 girls aged 6-15 years with blood and saliva collected on the same day. We measured all DNA methylation markers by bisulfite-pyrosequencing, except for Sat2 and Alu, which were measured by the MethyLight assay. Methylation levels measured in saliva DNA were lower than those in WBC DNA, with differences ranging from 2.8% for Alu to 14.1% for cg05575921. Methylation levels for the three repetitive elements measured in saliva DNA were all positively correlated with those in WBC DNA. However, there was a wide range in the Spearman correlations, with the smallest correlation found for Alu (0.24) and the strongest correlation found for LINE-1 (0.73). Spearman correlations for cg05575921, cg05951221, and cg11924019 were 0.33, 0.42, and 0.79, respectively. If these findings are replicated in larger studies, they suggest that, for selected methylation markers (e.g., LINE-1), methylation levels may be highly correlated between blood and saliva, while for others methylation markers, the levels may be more tissue specific. Thus, in studies that differ by DNA source, each interrogated site should be separately examined in order to evaluate the correlation in DNA methylation levels across DNA sources.

Indexed as

DNA MethylationAdolescentChildCpG IslandsDNAFemaleGenetic MarkersHumansProspective StudiesRepetitive Sequences, Nucleic AcidSalivaStatistics as TopicDNAGenetic Markersbuccal cellsDNA genomic methylationLINE-1pyrosequencingsalivawhite blood cells

Identifiers

PMID24756002
PMCPMC4143407
OpenAlexW2009461942

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.