Evidence map›Paper›PMID 24753429›Full record

ArticleNucleic acids research2014

InterMine: extensive web services for modern biology.

Alex Kalderimis, Rachel Lyne, Daniela Butano, Sergio Contrino, Mike Lyne, Joshua Heimbach, Fengyuan Hu, Richard Smith, Radek Stěpán, Julie Sullivan and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. SEND: a suite of tools for the easy sharing of linked biological data.Database : the journal of biological databases and curation · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. TargetMine 2022: a new vision into drug target analysis.Bioinformatics (Oxford, England) · 2022
    Article
  16. HumanMine: advanced data searching, analysis and cross-species comparison.Database : the journal of biological databases and curation · 2022
    Article
  17. Article
  18. Article
  19. Journal of personalized medicine · 2022
    Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alex KalderimisDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Rachel LyneDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Daniela ButanoDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Sergio ContrinoDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Mike LyneDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Joshua HeimbachDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Fengyuan HuDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Richard SmithDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Radek StěpánDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Julie SullivanDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.
Gos MicklemDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK g.micklem@gen.cam.ac.uk.

Funding

A Data Coordinating Center for modENCODEU41HG004269 · NHGRI · ONTARIO INSTITUTE FOR CANCER RESEARCH · PI STEIN, LINCOLN D. · 2007 to 2012
$7.1M
InterMOD: integrated data and tools to support model organism researchR01HG004834 · NHGRI · UNIVERSITY OF CAMBRIDGE · PI CHERRY, J. MICHAEL, MICKLEM, GOS · 2009 to 2013
$2.8M
NHGRI NIH HHS R01HG004834NHGRI NIH HHS U41HG004269Wellcome Trust 090297Wellcome Trust 099133
6 · The paper itself

Abstract

InterMine (www.intermine.org) is a biological data warehousing system providing extensive automatically generated and configurable RESTful web services that underpin the web interface and can be re-used in many other applications: to find and filter data; export it in a flexible and structured way; to upload, use, manipulate and analyze lists; to provide services for flexible retrieval of sequence segments, and for other statistical and analysis tools. Here we describe these features and discuss how they can be used separately or in combinations to support integrative and comparative analysis.

Indexed as

Databases, FactualSoftwareAnimalsChromosomesHumansInternetMiceSequence Analysis, DNAUser-Computer Interface

Identifiers

PMID24753429
PMCPMC4086141

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.