Evidence map›Paper›PMID 24752171›Full record

ArticleNature communications2014

Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development.

Jimena Giudice, Zheng Xia, Eric T Wang, Marissa A Scavuzzo, Amanda J Ward, Auinash Kalsotra, Wei Wang, Xander H T Wehrens, Christopher B Burge, Wei Li and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

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  13. Identification of a VPS29 isoform with restricted association to Retriever and Retromer accessory proteins through autoinhibition.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jimena GiudiceDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA.
Zheng Xia1] Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA [2] Division of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Eric T Wang1] Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Marissa A ScavuzzoDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA.
Amanda J Ward1] Department of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA [2] Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA [3].
Auinash Kalsotra1] Department of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA [2].
Wei WangDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Texas 77030, USA.
Xander H T Wehrens1] Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Texas 77030, USA [2] Department of Medicine, Baylor College of Medicine, Houston, Texas 77030, USA.
Christopher B BurgeDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Wei Li1] Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA [2] Division of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Thomas A Cooper1] Department of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA [2] Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA [3] Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Texas 77030, USA.
Baylor College of Medicine · USMassachusetts Institute of Technology · US

Funding

MOLECULAR PATHOGENESIS OF MYOTONIC DYSTROPHYR01AR045653 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1999 to 2018
$8.3M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI ARENKIEL, BENJAMIN R, NELSON, DAVID LOREN · 2014 to 2019
$7.8M
Ryanodine receptor regulation in post-operative atrial fibrillationR01HL089598 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI WEHRENS, XANDER H.T. · 2007 to 2022
$6.5M
TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR01HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1996 to 2018
$5.5M
Transcriptome processing networks in skeletal muscle: mechanisms and functionsR01AR060733 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 2011 to 2023
$4.0M
Regulation of Sarcoplasmic Reticulum Calcium Release in Heart FailureR01HL091947 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI WEHRENS, XANDER H.T. · 2009 to 2019
$3.2M
Determining the Role of Junctophilin-2 in Cardiac DiseaseR01HL117641 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI WEHRENS, XANDER H.T. · 2014 to 2017
$2.3M
Ppst-transcriptional regulation of gene expression in neuromuscular diseaseDP5OD017865 · OD · UNIVERSITY OF FLORIDA · PI WANG, ERIC T · 2013 to 2017
$2.0M
Computational and Experimental Modeling of Epigenetic DNA MethylationR01HG007538 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2014 to 2018
$1.9M
Role of CUGBP1 in skeletal muscle wasting in myotonic dystrophyF31NS067740 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI WHIPPLE, AMANDA JOY · 2010 to 2011
$48k
NHGRI NIH HHS R01 HG007538NHGRI NIH HHS R01HG007538NHLBI NIH HHS HL089598NHLBI NIH HHS HL091947NHLBI NIH HHS HL117641NHLBI NIH HHS R01 HL045565NHLBI NIH HHS R01HL045565NHLBI NIH HHS R01 HL089598NHLBI NIH HHS R01 HL091947NHLBI NIH HHS R01 HL117641NIAMS NIH HHS R01 AR045653NIAMS NIH HHS R01AR045653NIAMS NIH HHS R01 AR060733NIAMS NIH HHS R01AR060733NICHD NIH HHS U54 HD083092NIH HHS DP5 OD017865NINDS NIH HHS F31 NS067740NINDS NIH HHS F31NS067740
6 · The paper itself

Abstract

During postnatal development the heart undergoes a rapid and dramatic transition to adult function through transcriptional and post-transcriptional mechanisms, including alternative splicing (AS). Here we perform deep RNA-sequencing on RNA from cardiomyocytes and cardiac fibroblasts to conduct a high-resolution analysis of transcriptome changes during postnatal mouse heart development. We reveal extensive changes in gene expression and AS that occur primarily between postnatal days 1 and 28. Cardiomyocytes and cardiac fibroblasts show reciprocal regulation of gene expression reflecting differences in proliferative capacity, cell adhesion functions and mitochondrial metabolism. We further demonstrate that AS plays a role in vesicular trafficking and membrane organization. These AS transitions are enriched among targets of two RNA-binding proteins, Celf1 and Mbnl1, which undergo developmentally regulated changes in expression. Vesicular trafficking genes affected by AS during normal development (when Celf1 is downregulated) show a reversion to neonatal splicing patterns after Celf1 re-expression in adults. Short-term Celf1 induction in adult animals results in disrupted transverse tubule organization and calcium handling. These results identify potential roles for AS in multiple aspects of postnatal heart maturation, including vesicular trafficking and intracellular membrane dynamics.

Indexed as

Gene Expression Regulation, DevelopmentalAlternative SplicingAnimalsCELF1 ProteinDNA-Binding ProteinsFibroblastsHeartMiceMyocytes, CardiacRNA-Binding ProteinsRNA, MessengerSequence Analysis, RNAVesicular Transport ProteinsCELF1 ProteinCELF1 protein, mouseDNA-Binding ProteinsMbnl1 protein, mouseRNA-Binding ProteinsRNA, MessengerVesicular Transport Proteins

Identifiers

PMID24752171
PMCPMC4018662
OpenAlexW1575718175

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.