Evidence map›Paper›PMID 24748053›Full record

ArticleMolecular genetics and genomics : MGG2014

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress.

Sezer Okay, Ebru Derelli, Turgay Unver

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 181 citations in OpenAlex.

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  11. Genome-wide identification ofFrontiers in plant science · 2022
    Article
  12. Review
  13. Drought-responsive WRKY transcription factor genesFrontiers in plant science · 2022
    Article
  14. Article
  15. Review
  16. Regulation of a Cytochrome P450 GenePlant physiology · 2020
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sezer OkayDepartment of Biology, Faculty of Science, Çankırı Karatekin University, 18100, Çankırı, Turkey, sezerokay@gmail.com.
Ebru Derelli
Turgay Unver
Çankırı Karatekin University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The WRKY superfamily of transcription factors was shown to be involved in biotic and abiotic stress responses in plants such as wheat (Triticum aestivum L.), one of the major crops largely cultivated and consumed all over the world. Drought is an important abiotic stress resulting in a considerable amount of loss in agronomical yield. Therefore, identification of drought responsive WRKY members in wheat has a profound significance. Here, a total of 160 TaWRKY proteins were characterized according to sequence similarity, motif varieties, and their phylogenetic relationships. The conserved sequences of the TaWRKYs were aligned and classified into three main groups and five subgroups. A novel motif in wheat, WRKYGQR, was identified. To putatively determine the drought responsive TaWRKY members, publicly available RNA-Seq data were analyzed for the first time in this study. Through in silico searches, 35 transcripts were detected having an identity to ten known TaWRKY genes. Furthermore, relative expression levels of TaWRKY16/TaWRKY16-A, TaWRKY17, TaWRKY19-C, TaWRKY24, TaWRKY59, TaWRKY61, and TaWRKY82 were measured in root and leaf tissues of drought-tolerant Sivas 111/33 and susceptible Atay 85 cultivars. All of the quantified TaWRKY transcripts were found to be up-regulated in root tissue of Sivas 111/33. Differential expression of TaWRKY16, TaWRKY24, TaWRKY59, TaWRKY61 and TaWRKY82 genes was discovered for the first time upon drought stress in wheat. These comprehensive analyses bestow a better understanding about the WRKY TFs in bread wheat under water deficit, and increased number of drought responsive WRKYs would contribute to the molecular breeding of tolerant wheat cultivars.

Indexed as

TranscriptomeAdaptation, PhysiologicalAmino Acid MotifsAmino Acid SequenceConserved SequenceDehydrationDroughtsGene Expression Regulation, PlantMolecular Sequence DataOrgan SpecificityPhylogenyPlant LeavesPlant ProteinsPlant RootsStress, PhysiologicalTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID24748053
OpenAlexW1971864855

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.