Evidence map›Paper›PMID 24747940›Full record

ArticleNature structural & molecular biology2014

Evidence for a group II intron-like catalytic triplex in the spliceosome.

Sebastian M Fica, Melissa A Mefford, Joseph A Piccirilli, Jonathan P Staley

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. RNA Triple Helices: From Structures and Mechanisms to Therapeutic Targets.International journal of biological sciences · 2026
    Review
  3. Article
  4. Article
  5. Article
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  8. Structural basis of branching during RNA splicing.Nature structural & molecular biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Thoughts on how to think (and talk) about RNA structure.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The ChloroplastCells · 2021
    Review
  18. Review
  19. Topology of the U12-U6ACS omega · 2020
    Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sebastian M Fica *Graduate Program in Cell and Molecular Biology, The University of Chicago, Chicago IL.
Melissa A Mefford *Committee on Genetics Genomics and Systems Biology, The University of Chicago, Chicago, IL.
Joseph A PiccirilliDepartment of Chemistry, The University of Chicago, Chicago IL.
Jonathan P StaleyDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago IL.
University of Chicago · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
The Catalytic Mechanism of Nuclear Premessenger RNA Splicing by the SpliceosomeR01GM088656 · NIGMS · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY, STALEY, JONATHAN P · 2010 to 2017
$4.2M
NCATS NIH HHS UL1 TR000430NIGMS NIH HHS R01 GM088656NIGMS NIH HHS R01GM088656NIGMS NIH HHS T32 GM007183
6 · The paper itself

Abstract

To catalyze pre-mRNA splicing, U6 small nuclear RNA positions two metals that interact directly with the scissile phosphates. U6 metal ligands correspond stereospecifically to metal ligands within the catalytic domain V of a group II self-splicing intron. Domain V ligands are organized by base-triple interactions, which also juxtapose the 3' splice site with the catalytic metals. However, in the spliceosome, the mechanism for organizing catalytic metals and recruiting the substrate has remained unclear. Here we show by genetics, cross-linking and biochemistry in yeast that analogous triples form in U6 and promote catalytic-metal binding and both chemical steps of splicing. Because the triples include an element that defines the 5' splice site, they also provide a mechanism for juxtaposing the pre-mRNA substrate with the catalytic metals. Our data indicate that U6 adopts a group II intron-like tertiary conformation to catalyze splicing.

Indexed as

RNA SplicingBase SequenceModels, MolecularNucleic Acid ConformationRNASaccharomyces cerevisiaeSpliceosomesRNA

Identifiers

PMID24747940
PMCPMC4257784
OpenAlexW2035956243

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.