Evidence map›Paper›PMID 24747939›Full record

ArticleNature structural & molecular biology2014

Conformational dynamics of ligand-dependent alternating access in LeuT.

Kelli Kazmier, Shruti Sharma, Matthias Quick, Shahidul M Islam, Benoît Roux, Harel Weinstein, Jonathan A Javitch, Hassane S McHaourab

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
23.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 155 citations in OpenAlex.

  1. Article
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  3. Protein Modeling with DEER Spectroscopy.Annual review of biophysics · 2025
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  4. Control of Conformational Transitions by the Conserved GXInternational journal of molecular sciences · 2025
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Kelli Kazmier1] Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, USA. [2].
Shruti Sharma1] Department of Molecular Physiology and Biophysics, Nashville, Tennessee, USA. [2].
Matthias Quick1] Center for Molecular Recognition, Columbia University College of Physicians and Surgeons, New York, New York, USA. [2] Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York, USA. [3] New York State Psychiatric Institute, Division of Molecular Therapeutics, New York, New York, USA.
Shahidul M IslamDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois, USA.
Benoît RouxDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois, USA.
Harel Weinstein1] Department of Physiology and Biophysics, Weill Medical College of Cornell University, New York, New York, USA. [2] HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Medical College of Cornell University, New York, New York, USA.ORCID 0000000334739818
Jonathan A Javitch1] Center for Molecular Recognition, Columbia University College of Physicians and Surgeons, New York, New York, USA. [2] Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York, USA. [3] New York State Psychiatric Institute, Division of Molecular Therapeutics, New York, New York, USA. [4] Department of Pharmacology, Columbia University College of Physicians and Surgeons, New York, New York, USA.
Hassane S McHaourab1] Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, USA. [2] Department of Molecular Physiology and Biophysics, Nashville, Tennessee, USA.
Columbia University · USUniversity of Chicago · USVanderbilt University · USCornell University · USMolecular Sensing (United States) · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI NAKAMOTO, ROBERT K. · 2010 to 2017
$31.9M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
STRUCTURE/FUNCTION OF THE HUMAN DOPAMINE TRANSPORTERP01DA012408 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI WEINSTEIN, HAREL · 1999 to 2015
$14.2M
Conformational Changes Underlying Intracellular Gating of the Leucine TransporterF31MH095383 · NIMH · VANDERBILT UNIVERSITY · PI KAZMIER, KELLI · 2011 to 2012
$55k
NCATS NIH HHS UL1 TR000430NIDA NIH HHS K05DA022414NIDA NIH HHS P01 DA012408NIDA NIH HHS P01DA012408NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM087519NIMH NIH HHS F31 MH095383NIMH NIH HHS F31-MH095383-01
6 · The paper itself

Abstract

The leucine transporter (LeuT) from Aquifex aeolicus is a bacterial homolog of neurotransmitter/sodium symporters (NSSs) that catalyze reuptake of neurotransmitters at the synapse. Crystal structures of wild-type and mutants of LeuT have been interpreted as conformational states in the coupled transport cycle. However, the mechanistic identities inferred from these structures have not been validated, and the ligand-dependent conformational equilibrium of LeuT has not been defined. Here, we used distance measurements between spin-label pairs to elucidate Na(+)- and leucine-dependent conformational changes on the intracellular and extracellular sides of the transporter. The results identify structural motifs that underlie the isomerization of LeuT between outward-facing, inward-facing and occluded states. The conformational changes reported here present a dynamic picture of the alternating-access mechanism of LeuT and NSSs that is different from the inferences reached from currently available structural models.

Indexed as

Bacterial ProteinsLigandsModels, MolecularNeurotransmitter Transport ProteinsProtein Structure, TertiarySpin LabelsSymportersBacterial ProteinsLigandsNeurotransmitter Transport ProteinsSpin LabelsSymporters

Identifiers

PMID24747939
PMCPMC4050370
OpenAlexW2058981075

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.