Evidence map›Paper›PMID 24747890›Full record

ArticleApplied and environmental microbiology2014

Genomic features of a bumble bee symbiont reflect its host environment.

Vincent G Martinson, Tanja Magoc, Hauke Koch, Steven L Salzberg, Nancy A Moran

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. International journal of systematic and evolutionary microbiology · 2026
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  4. Review
  5. Article
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  7. Characterization of gut symbionts from wild-caughtInternational journal of systematic and evolutionary microbiology · 2024
    Article
  8. Article
  9. Article
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  11. Article
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  13. Review
  14. Article
  15. Recovery of metagenomic data from theWellcome open research · 2023
    Article
  16. Frontiers in microbiology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vincent G MartinsonCenter for Insect Science, University of Arizona, Tucson, Arizona, USA Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA v.martinson@rochester.edu.
Tanja MagocCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
Hauke KochDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA Department of Integrative Biology, University of Texas at Austin, Austin, Texas, USA.
Steven L SalzbergCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
Nancy A MoranDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA Department of Integrative Biology, University of Texas at Austin, Austin, Texas, USA.

Funding

Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
Johnny Bee Good: Bees as Models to Study the Hijacking of the Reward SystemDP1OD006416 · OD · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ROBINSON, GENE E · 2009 to 2011
$2.4M
Bioinformatics Software for Analyzing Microbial GenomesR01GM083873 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 2008 to 2017
$2.1M
NHGRI NIH HHS R01 HG006677NHGRI NIH HHS R01-HG006677NIGMS NIH HHS R01 GM083873NIH HHS 1DP1OD006416-01NIH HHS DP1 OD006416
6 · The paper itself

Abstract

Here, we report the genome of one gammaproteobacterial member of the gut microbiota, for which we propose the name "Candidatus Schmidhempelia bombi," that was inadvertently sequenced alongside the genome of its host, the bumble bee, Bombus impatiens. This symbiont is a member of the recently described bacterial order Orbales, which has been collected from the guts of diverse insect species; however, "Ca. Schmidhempelia" has been identified exclusively with bumble bees. Metabolic reconstruction reveals that "Ca. Schmidhempelia" lacks many genes for a functioning NADH dehydrogenase I, all genes for the high-oxygen cytochrome o, and most genes in the tricarboxylic acid (TCA) cycle. "Ca. Schmidhempelia" has retained NADH dehydrogenase II, the low-oxygen specific cytochrome bd, anaerobic nitrate respiration, mixed-acid fermentation pathways, and citrate fermentation, which may be important for survival in low-oxygen or anaerobic environments found in the bee hindgut. Additionally, a type 6 secretion system, a Flp pilus, and many antibiotic/multidrug transporters suggest complex interactions with its host and other gut commensals or pathogens. This genome has signatures of reduction (2.0 megabase pairs) and rearrangement, as previously observed for genomes of host-associated bacteria. A survey of wild and laboratory B. impatiens revealed that "Ca. Schmidhempelia" is present in 90% of individuals and, therefore, may provide benefits to its host.

Indexed as

Genome, BacterialSymbiosisAnimalsBeesDNA, BacterialGammaproteobacteriaMetabolic Networks and PathwaysMolecular Sequence DataSequence Analysis, DNADNA, Bacterial

Identifiers

PMID24747890
PMCPMC4054214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.