Evidence map›Paper›PMID 24747759›Full record

ArticleG3 (Bethesda, Md.)2014

Efficient molecular marker design using the MaizeGDB Mo17 SNPs and Indels track.

A Mark Settles, Alyssa M Bagadion, Fang Bai, Junya Zhang, Brady Barron, Kristen Leach, Janaki S Mudunkothge, Cassandra Hoffner, Saadia Bihmidine, Erin Finefield and 7 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. TheProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. MaizeThe Journal of cell biology · 2019
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

A Mark SettlesHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611 settles@ufl.edu.
Alyssa M BagadionHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Fang BaiHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Junya ZhangHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Brady BarronDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Kristen LeachDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Janaki S MudunkothgeHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Cassandra HoffnerDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Saadia BihmidineDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Erin FinefieldDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Jaime HibbardDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.
Emily DieterDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211 Biology Department, Saint Michael's College, Colchester, Vermont 05439.
I Alex MalidelisHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Jeffery L GustinHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Vita KaroblyteHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
Chi-Wah TseungHorticultural Sciences Department and Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32611.
David M BraunDivision of Biological Sciences, Interdisciplinary Plant Group and the Missouri Maize Center, University of Missouri, Columbia, Missouri 65211.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Positional cloning in maize (Zea mays) requires development of markers in the region of interest. We found that primers designed to amplify annotated insertion-deletion polymorphisms of seven base pairs or greater between B73 and Mo17 produce polymorphic markers at a 97% frequency with 49% of the products showing co-dominant fragment length polymorphisms. When the same polymorphisms are used to develop markers for B73 and W22 or Mo17 and W22 mapping populations, 22% and 31% of markers are co-dominant, respectively. There are 38,223 Indel polymorphisms that can be converted to markers providing high-density coverage throughout the maize genome. This strategy significantly increases the efficiency of marker development for fine-mapping in maize.

Indexed as

Genetic MarkersINDEL MutationPolymorphism, Single NucleotideChromosome MappingChromosomes, PlantDatabases, Nucleic AcidGenetic LociZea maysGenetic Markersgenetic mappinginsertion–deletion polymorphismmolecular markerpositional cloningZea mays

Identifiers

PMID24747759
PMCPMC4065257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.