Evidence map›Paper›PMID 24744238›Full record

ArticleNucleic acids research2014

Different gene-specific mechanisms determine the 'revised-response' memory transcription patterns of a subset of A. thaliana dehydration stress responding genes.

Ning Liu, Yong Ding, Michael Fromm, Zoya Avramova

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
10.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 111 citations in OpenAlex.

  1. Integrated Genomic and Functional Analyses IdentifyInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Ning LiuUniversity of Nebraska School of Biological Sciences, 1901 Vine Street, Lincoln, NE 68588, USA.
Yong DingUniversity of Nebraska School of Biological Sciences, 1901 Vine Street, Lincoln, NE 68588, USA School of Life Sciences, University of Science & Technology of China, 443 Huangshang Road, Hefei, Anhui 230027, China.
Michael FrommUniversity of Nebraska Center for Biotechnology and Center for Plant Science Innovation, 1901 Vine Street, Lincoln, NE 68588, USA.
Zoya AvramovaUniversity of Nebraska School of Biological Sciences, 1901 Vine Street, Lincoln, NE 68588, USA zavramova2@unl.edu.
University of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants that have experienced several exposures to dehydration stress show increased resistance to future exposures by producing faster and/or stronger reactions, while many dehydration stress responding genes in Arabidopsis thaliana super-induce their transcription as a 'memory' from the previous encounter. A previously unknown, rather unusual, memory response pattern is displayed by a subset of the dehydration stress response genes. Despite robustly responding to a first stress, these genes return to their initial, pre-stressed, transcript levels during the watered recovery; surprisingly, they do not respond further to subsequent stresses of similar magnitude and duration. This transcriptional behavior defines the 'revised-response' memory genes. Here, we investigate the molecular mechanisms regulating this transcription memory behavior. Potential roles of abscisic acid (ABA), of transcription factors (TFs) from the ABA signaling pathways (ABF2/3/4 and MYC2), and of histone modifications (H3K4me3 and H3K27me3) as factors in the revised-response transcription memory patterns are elucidated. We identify the TF MYC2 as the critical component for the memory behavior of a specific subset of MYC2-dependent genes.

Indexed as

Gene Expression Regulation, PlantTranscription, GeneticAbscisic AcidAdaptation, PhysiologicalArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsChromatinDehydrationDNA Polymerase IIEpigenesis, GeneticHistonesPlant Growth RegulatorsStress, PhysiologicalAbscisic AcidArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsChromatinDNA Polymerase IIHistonesMYC2 protein, ArabidopsisPlant Growth Regulators

Identifiers

PMID24744238
PMCPMC4027201
OpenAlexW2136408323

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.