ArticlePloS one2014
Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 74 citations in OpenAlex.
- Urea assimilation and oxidation support activity of phylogenetically diverse microbial communities of the dark ocean.The ISME journal · 2024Article
- Vertical segregation and phylogenetic characterization of archaea and archaeal ammonia monooxygenase gene in the water column of the western Arctic Ocean.Extremophiles : life under extreme conditions · 2023Article
- Microbe-driven elemental cycling enables microbial adaptation to deep-sea ferromanganese nodule sediment fields.Microbiome · 2023Article
- Impact of sterilization and chemical fertilizer on the microbiota of oil palm seedlings.Frontiers in microbiology · 2023Article
- Marine Group-II archaea dominate particle-attached as well as free-living archaeal assemblages in the surface waters of Kongsfjorden, Svalbard, Arctic Ocean.Antonie van Leeuwenhoek · 2021Article
- Article
- Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms.Microbiome · 2020Article
- Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System.Frontiers in microbiology · 2020Article
- Contributions of single-cell genomics to our understanding of planktonic marine archaea.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Review
- Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution.The ISME journal · 2019Article
- Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP.Frontiers in microbiology · 2019Article
- Microbial Communities in a Flow-Through Fish Farm for Lumpfish (Frontiers in microbiology · 2019Article
- Species-level functional profiling of metagenomes and metatranscriptomes.Nature methods · 2018Article
- Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits.Scientific reports · 2018Article
- Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico.Frontiers in microbiology · 2018Article
- Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration.Frontiers in microbiology · 2018Article
- Comparison of Thaumarchaeotal populations from four deep sea basins.FEMS microbiology ecology · 2017Article
- Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment.Scientific reports · 2017Article
- New insights into marine group III Euryarchaeota, from dark to light.The ISME journal · 2017Article
- Prokaryotic Community Composition in Arctic Kongsfjorden and Sub-Arctic Northern Bering Sea Sediments As Revealed by 454 Pyrosequencing.Frontiers in microbiology · 2017Article
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Authors and funding
13 authors at 8 institutions in 3 countries.
Funding
Abstract
Marine Group I (MGI) Thaumarchaeota are one of the most abundant and cosmopolitan chemoautotrophs within the global dark ocean. To date, no representatives of this archaeal group retrieved from the dark ocean have been successfully cultured. We used single cell genomics to investigate the genomic and metabolic diversity of thaumarchaea within the mesopelagic of the subtropical North Pacific and South Atlantic Ocean. Phylogenetic and metagenomic recruitment analysis revealed that MGI single amplified genomes (SAGs) are genetically and biogeographically distinct from existing thaumarchaea cultures obtained from surface waters. Confirming prior studies, we found genes encoding proteins for aerobic ammonia oxidation and the hydrolysis of urea, which may be used for energy production, as well as genes involved in 3-hydroxypropionate/4-hydroxybutyrate and oxidative tricarboxylic acid pathways. A large proportion of protein sequences identified in MGI SAGs were absent in the marine cultures Cenarchaeum symbiosum and Nitrosopumilus maritimus, thus expanding the predicted protein space for this archaeal group. Identifiable genes located on genomic islands with low metagenome recruitment capacity were enriched in cellular defense functions, likely in response to viral infections or grazing. We show that MGI Thaumarchaeota in the dark ocean may have more flexibility in potential energy sources and adaptations to biotic interactions than the existing, surface-ocean cultures.
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