Evidence map›Paper›PMID 24742173›Full record

ArticleBMC microbiology2014

Molecular characterization of cytolethal distending toxin gene-positive Escherichia coli from healthy cattle and swine in Nara, Japan.

Atsushi Hinenoya, Kensuke Shima, Masahiro Asakura, Kazuhiko Nishimura, Teizo Tsukamoto, Tadasuke Ooka, Tetsuya Hayashi, Thandavarayan Ramamurthy, Shah M Faruque, Shinji Yamasaki

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 57 citations in OpenAlex.

  1. Molecular Detection of Shiga Toxin-ProducingInternational journal of microbiology · 2024
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  4. Microbiology and Epidemiology ofMicroorganisms · 2022
    Review
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  9. GenotoxicComparative medicine · 2019
    Article
  10. Article
  11. Detection of multi-drug resistant (MDR)Journal of advanced veterinary and animal research · 2018
    Article
  12. Article
  13. Review
  14. Detection of Escherichia albertii from chicken meat and giblets.The Journal of veterinary medical science · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Atsushi Hinenoya
Kensuke Shima
Masahiro Asakura
Kazuhiko Nishimura
Teizo Tsukamoto
Tadasuke Ooka
Tetsuya Hayashi
Thandavarayan Ramamurthy
Shah M Faruque
Shinji YamasakiGraduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-58 Rinku ourai-kita, Izumisano, Osaka 598-8531, Japan. shinji@vet.osakafu-u.ac.jp.
Osaka Prefecture University · JPUniversity of Miyazaki · JPInternational Centre for Diarrhoeal Disease Research · BDNational Institute of Cholera and Enteric Diseases · INUniversity of Lübeck · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCytolethal distending toxin (CDT)-producing Escherichia coli (CTEC) has been isolated from patients with gastrointestinal or urinary tract infection, and sepsis. However, the source of human infection remains unknown. In this study, we attempted to detect and isolate CTEC strains from fecal specimens of healthy farm animals and characterized them phenotypically and genotypically.

resultsBy PCR analysis, the cdtB gene was detected in 90 and 14 out of 102 and 45 stool specimens of healthy cattle and swine, respectively, and none from 45 chicken samples. Subtypes of the cdtB genes (I to V) were further examined by restriction fragment length polymorphism analysis of the amplicons and by type-specific PCRs for the cdt-III and cdt-V genes. Of the 90 cdtB gene-positive cattle samples, 2 cdt-I, 25 cdt-III, 1 cdt-IV, 52 cdt-V and 1 both cdt-III and cdt-V gene-positive strains were isolated while 1 cdt-II and 6 cdt-V gene-positive were isolated from 14 cdtB positive swine samples. Serotypes of some isolates were identical to those of human isolates. Interestingly, a cdt-II gene-positive strain isolated from swine was for the first time identified as Escherichia albertii. Phylogenetic analysis grouped 87 E. coli strains into 77 phylogroup B1, 6 B2, and 4 D, respectively. Most of the B1 strains harbored both lpfAO113 and ehaA. Three and twenty-two cdt-V gene-positive strains harbored eaeA and stx genes, respectively, and seven possessed cdt-V, stx and subAB genes. The cnf2 gene, normally present in cdt-III gene-positive strains, was also detected in cdt-V gene-positive strains.

conclusionsOur results suggest that healthy cattle and swine could be the reservoir of CTEC, and they could be a potential source of human infections.

Indexed as

AnimalsBacterial ToxinsCattleChickensDNA, BacterialEscherichia coliFecesJapanMolecular Sequence DataPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthSequence Analysis, DNASwineBacterial Toxinscytolethal distending toxinDNA, Bacterial

Identifiers

PMID24742173
PMCPMC4001111
OpenAlexW2100541473

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.