Evidence map›Paper›PMID 24741080›Full record

ArticleJournal of virology2014

Liquefaction of semen generates and later degrades a conserved semenogelin peptide that enhances HIV infection.

Nadia R Roan, Haichuan Liu, Shariq M Usmani, Jason Neidleman, Janis A Müller, Aram Avila-Herrera, Ali Gawanbacht, Onofrio Zirafi, Simon Chu, Ming Dong and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Amyloid-mediated RNA uptake by sperm for embryonic delivery.bioRxiv : the preprint server for biology · 2025
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  7. Review
  8. Article
  9. Article
  10. Semen: A modulator of female genital tract inflammation and a vector for HIV-1 transmission.American journal of reproductive immunology (New York, N.Y. : 1989) · 2021
    Review
  11. Article
  12. Review
  13. Observational
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Retroviruses and reproduction revisited.Journal of assisted reproduction and genetics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Nadia R RoanGladstone Institute of Virology and Immunology, University of California, San Francisco, California, USA Department of Urology, University of California, San Francisco, California, USA roann@urology.ucsf.edu.
Haichuan LiuDepartment of Obstetrics, Gynecology & Reproductive Sciences and Sandler-Moore Mass Spectrometry Core Facility, University of California, San Francisco, California, USA.
Shariq M UsmaniInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Jason NeidlemanGladstone Institute of Virology and Immunology, University of California, San Francisco, California, USA.
Janis A MüllerInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Aram Avila-HerreraGladstone Institute of Cardiovascular Diseases, University of California, San Francisco, California, USA.
Ali GawanbachtInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Onofrio ZirafiInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Simon ChuGladstone Institute of Virology and Immunology, University of California, San Francisco, California, USA.
Ming DongLawrence Berkeley National Laboratory, Berkeley, California, USA.
Senthil T KumarInstitute of Pharmaceutical Biotechnology, Ulm University, Ulm, Germany.
James F SmithDepartment of Urology, University of California, San Francisco, California, USA.
Katherine S PollardGladstone Institute of Cardiovascular Diseases, University of California, San Francisco, California, USA Department of Epidemiology and Biostatistics, Institute for Human Genetics, University of California, San Francisco, California, USA.
Marcus FändrichInstitute of Pharmaceutical Biotechnology, Ulm University, Ulm, Germany.
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Jan MünchInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
H Ewa WitkowskaDepartment of Obstetrics, Gynecology & Reproductive Sciences and Sandler-Moore Mass Spectrometry Core Facility, University of California, San Francisco, California, USA.
Warner C GreeneGladstone Institute of Virology and Immunology, University of California, San Francisco, California, USA Departments of Medicine and Microbiology and Immunology, University of California, San Francisco, California, USA.
Universität Ulm · DEUniversity of California, San Francisco · USGladstone Institutes · USLawrence Berkeley National Laboratory · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Leigh Clarke · 1999 to 2026
$209.7M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Viral and Host Factors Promoting Male-to-Female Transmission of HIVP01AI083050 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI GIUDICE, LINDA C, GREENBLATT, RUTH MARTHA · 2009 to 2013
$10.1M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
UCSF KURe Career Development ProgramK12DK083021 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BASKIN, LAURENCE, CARROLL, PETER R · 2008 to 2017
$5.9M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
Host Factors Influencing HIV Viral Load and Infectivity in SemenR01HD074511 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PILCHER, CHRISTOPHER D · 2012 to 2016
$3.1M
Exploring the Role of Semen Amyloids in Promoting HIV Infection and FertilizationK99AI104262 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROAN, NADIA R · 2013 to 2013
$133k
NCI NIH HHS P30 CA082103NIAID NIH HHS 1P01 AI083050NIAID NIH HHS K99 AI104262NIAID NIH HHS K99/R00 1K99AI104262NIAID NIH HHS P01 AI083050NIAID NIH HHS P30 AI027763NIBIB NIH HHS T32 EB009383NICHD NIH HHS R01 HD074511NICHD NIH HHS R01HD074511NIDDK NIH HHS 5K12 DK083021-04NIDDK NIH HHS K12 DK083021NIGMS NIH HHS T32 GM067547
6 · The paper itself

Abstract

unlabelledSemen enhances HIV infection in vitro, but how long it retains this activity has not been carefully examined. Immediately postejaculation, semen exists as a semisolid coagulum, which then converts to a more liquid form in a process termed liquefaction. We demonstrate that early during liquefaction, semen exhibits maximal HIV-enhancing activity that gradually declines upon further incubation. The decline in HIV-enhancing activity parallels the degradation of peptide fragments derived from the semenogelins (SEMs), the major components of the coagulum that are cleaved in a site-specific and progressive manner upon initiation of liquefaction. Because amyloid fibrils generated from SEM fragments were recently demonstrated to enhance HIV infection, we set out to determine whether any of the liquefaction-generated SEM fragments associate with the presence of HIV-enhancing activity. We identify SEM1 from amino acids 86 to 107 [SEM1(86-107)] to be a short, cationic, amyloidogenic SEM peptide that is generated early in the process of liquefaction but that, conversely, is lost during prolonged liquefaction due to the activity of serine proteases. Synthetic SEM1(86-107) amyloids directly bind HIV-1 virions and are sufficient to enhance HIV infection of permissive cells. Furthermore, endogenous seminal levels of SEM1(86-107) correlate with donor-dependent variations in viral enhancement activity, and antibodies generated against SEM1(86-107) recognize endogenous amyloids in human semen. The amyloidogenic potential of SEM1(86-107) and its virus-enhancing properties are conserved among great apes, suggesting an evolutionarily conserved function. These studies identify SEM1(86-107) to be a key, HIV-enhancing amyloid species in human semen and underscore the dynamic nature of semen's HIV-enhancing activity. IMPORTANCE: Semen, the most common vehicle for HIV transmission, enhances HIV infection in vitro, but how long it retains this activity has not been investigated. Semen naturally undergoes physiological changes over time, whereby it converts from a gel-like consistency to a more liquid form. This process, termed liquefaction, is characterized at the molecular level by site-specific and progressive cleavage of SEMs, the major components of the coagulum, by seminal proteases. We demonstrate that the HIV-enhancing activity of semen gradually decreases over the course of extended liquefaction and identify a naturally occurring semenogelin-derived fragment, SEM1(86-107), whose levels correlate with virus-enhancing activity over the course of liquefaction. SEM1(86-107) amyloids are naturally present in semen, and synthetic SEM1(86-107) fibrils bind virions and are sufficient to enhance HIV infection. Therefore, by characterizing dynamic changes in the HIV-enhancing activity of semen during extended liquefaction, we identified SEM1(86-107) to be a key virus-enhancing component of human semen.

Indexed as

Amino Acid SequenceAmyloidBlotting, WesternHIV-1HIV InfectionsHumansMolecular Sequence DataPeptide FragmentsPhylogenyProteolysisSemenSeminal Vesicle Secretory ProteinsSequence Homology, Amino AcidVirus InternalizationAmyloidPeptide FragmentsSeminal Vesicle Secretory Proteinsseminal vesicle-specific antigen

Identifiers

PMID24741080
PMCPMC4054457
OpenAlexW2161131941

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.