Evidence map›Paper›PMID 24740960›Full record

ReviewJournal of the Royal Society, Interface2014

From local structure to a global framework: recognition of protein folds.

Agnel Praveen Joseph, Alexandre G de Brevern

Abstract readReview
In one paragraph

Review in Journal of the Royal Society, Interface, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. A Synopsis of Proteins and Their Purification.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. Protein flexibility in the light of structural alphabets.Frontiers in molecular biosciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Agnel Praveen JosephScience and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, , Didcot OX11 0QX, UK.
Alexandre G de Brevern

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein folding has been a major area of research for many years. Nonetheless, the mechanisms leading to the formation of an active biological fold are still not fully apprehended. The huge amount of available sequence and structural information provides hints to identify the putative fold for a given sequence. Indeed, protein structures prefer a limited number of local backbone conformations, some being characterized by preferences for certain amino acids. These preferences largely depend on the local structural environment. The prediction of local backbone conformations has become an important factor to correctly identifying the global protein fold. Here, we review the developments in the field of local structure prediction and especially their implication in protein fold recognition.

Indexed as

Protein ConformationProtein FoldingProteinsProteinsbioinformaticslocal structure predictionprotein fold recognitionsequence annotationstructural alphabetsthreading

Identifiers

PMID24740960
PMCPMC4006237

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.