Evidence map›Paper›PMID 24740277›Full record

ArticlePloS one2014

Nickel-resistance determinants in Acidiphilium sp. PM identified by genome-wide functional screening.

Patxi San Martin-Uriz, Salvador Mirete, Pedro J Alcolea, Manuel J Gomez, Ricardo Amils, Jose E Gonzalez-Pastor

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Patxi San Martin-UrizCentro de Astrobiología (INTA-CSIC), Instituto Nacional de Técnica Aeroespacial, Torrejón de Ardoz, Madrid, Spain.
Salvador MireteCentro de Astrobiología (INTA-CSIC), Instituto Nacional de Técnica Aeroespacial, Torrejón de Ardoz, Madrid, Spain.
Pedro J AlcoleaCentro de Investigaciones Biológicas (CSIC), Consejo Superior de Investigaciones Científicas, Madrid, Spain.
Manuel J GomezCentro de Astrobiología (INTA-CSIC), Instituto Nacional de Técnica Aeroespacial, Torrejón de Ardoz, Madrid, Spain.
Ricardo AmilsCentro de Astrobiología (INTA-CSIC), Instituto Nacional de Técnica Aeroespacial, Torrejón de Ardoz, Madrid, Spain; Centro de Biología Molecular Severo Ochoa (UAM-CSIC), Universidad Autónoma de Madrid, Madrid, Spain.
Jose E Gonzalez-PastorCentro de Astrobiología (INTA-CSIC), Instituto Nacional de Técnica Aeroespacial, Torrejón de Ardoz, Madrid, Spain.
Centro de Astrobiología · ESInstituto Nacional de Técnica Aeroespacial · ESConsejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidiphilium spp. are conspicuous dwellers of acidic, metal-rich environments. Indeed, they are among the most metal-resistant organisms; yet little is known about the mechanisms behind the metal tolerance in this genus. Acidiphilium sp. PM is an environmental isolate from Rio Tinto, an acidic, metal-laden river located in southwestern Spain. The characterization of its metal resistance revealed a remarkable ability to tolerate high Ni concentrations. Here we report the screening of a genomic library of Acidiphilium sp. PM to identify genes involved in Ni resistance. This approach revealed seven different genes conferring Ni resistance to E. coli, two of which form an operon encoding the ATP-dependent protease HslVU (ClpQY). This protease was found to enhance resistance to both Ni and Co in E. coli, a function not previously reported. Other Ni-resistance determinants include genes involved in lipopolysaccharide biosynthesis and the synthesis of branched amino acids. The diversity of molecular functions of the genes recovered in the screening suggests that Ni resistance in Acidiphilium sp. PM probably relies on different molecular mechanisms.

Indexed as

AcidiphiliumATP-Dependent ProteasesBacteriaBacterial ProteinsDrug Resistance, BacterialGene Transfer, HorizontalGenome, BacterialGenomic LibraryLipopolysaccharidesMicrobial ViabilityMolecular Sequence DataNickelOpen Reading FramesOperonPhylogenyRiversATP-Dependent ProteasesBacterial ProteinsLipopolysaccharidesNickel

Identifiers

PMID24740277
PMCPMC3989265
OpenAlexW1989689382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.