Evidence map›Paper›PMID 24740116›Full record

ArticlePloS one2014

Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes.

Denis V Tikhonenkov, Jan Janouškovec, Alexander P Mylnikov, Kirill V Mikhailov, Timur G Simdyanov, Vladimir V Aleoshin, Patrick J Keeling

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  3. The fluid dynamics and functional diversity of the flagella of free-living flagellates.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Denis V TikhonenkovCanadian Institute for Advanced Research, Botany Department, University of British Columbia, Vancouver, British Columbia, Canada; Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Provence, Russia.
Jan JanouškovecCanadian Institute for Advanced Research, Botany Department, University of British Columbia, Vancouver, British Columbia, Canada.
Alexander P MylnikovInstitute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Provence, Russia.
Kirill V MikhailovBelozersky Institute for Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Timur G SimdyanovFaculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
Vladimir V AleoshinBelozersky Institute for Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Patrick J KeelingCanadian Institute for Advanced Research, Botany Department, University of British Columbia, Vancouver, British Columbia, Canada.

Funding

Canadian Institutes of Health Research MOP-42517
6 · The paper itself

Abstract

The evolutionary and ecological importance of predatory flagellates are too often overlooked. This is not only a gap in our understanding of microbial diversity, but also impacts how we interpret their better-studied relatives. A prime example of these problems is found in the alveolates. All well-studied species belong to three large clades (apicomplexans, dinoflagellates, and ciliates), but the predatory colponemid flagellates are also alveolates that are rare in nature and seldom cultured, but potentially important to our understanding of alveolate evolution. Recently we reported the first cultivation and molecular analysis of several colponemid-like organisms representing two novel clades in molecular trees. Here we provide ultrastructural analysis and formal species descriptions for both new species, Colponema vietnamica n. sp. and Acavomonas peruviana n. gen. n. sp. Morphological and feeding characteristics concur with molecular data that both species are distinct members of alveolates, with Acavomonas lacking the longitudinal phagocytotic groove, a defining feature of Colponema. Based on ultrastructure and molecular phylogenies, which both provide concrete rationale for a taxonomic reclassification of Alveolata, we establish the new phyla Colponemidia nom. nov. for the genus Colponema and its close relatives, and Acavomonidia nom. nov. for the genus Acavomonas and its close relatives. The morphological data presented here suggests that colponemids are central to our understanding of early alveolate evolution, and suggest they also retain features of the common ancestor of all eukaryotes.

Indexed as

PhylogenyAlveolataBiological EvolutionDNA, ProtozoanPeruRNA, Ribosomal, 18SRussiaSequence Analysis, DNASoilVietnamDNA, ProtozoanRNA, Ribosomal, 18SSoil

Identifiers

PMID24740116
PMCPMC3989336

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.