Evidence map›Paper›PMID 24739648›Full record

ArticleG3 (Bethesda, Md.)2014

The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs.

Benjamin P Kleinstiver, Li Wang, Jason M Wolfs, Tomasz Kolaczyk, Brendon McDowell, Xu Wang, Caroline Schild-Poulter, Adam J Bogdanove, David R Edgell

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Delivery of gene editing therapeutics.Nanomedicine : nanotechnology, biology, and medicine · 2023
    Review
  8. Article
  9. Review
  10. Applications of Alternative Nucleases in the Age of CRISPR/Cas9.International journal of molecular sciences · 2017
    Review
  11. Review
  12. Biasing genome-editing events toward precise length deletions with an RNA-guided TevCas9 dual nuclease.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Article
  14. Genome engineering: Drosophila melanogaster and beyond.Wiley interdisciplinary reviews. Developmental biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Benjamin P KleinstiverDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1.
Li WangDepartment of Plant Pathology and Plant-Microbe Biology, Cornell University, 334 Plant Science, Ithaca, New York 14853.
Jason M WolfsDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1.
Tomasz KolaczykDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1.
Brendon McDowellDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1.
Xu WangRobarts Research Institute, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5B7.
Caroline Schild-PoulterDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1 Robarts Research Institute, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5B7.
Adam J BogdanoveDepartment of Plant Pathology and Plant-Microbe Biology, Cornell University, 334 Plant Science, Ithaca, New York 14853 dedgell@uwo.ca ajb7@cornell.edu.
David R EdgellDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada N6A 5C1 dedgell@uwo.ca ajb7@cornell.edu.
Western University · CACornell University · US

Funding

DNA targeting by TAL effectorsR01GM098861 · NIGMS · IOWA STATE UNIVERSITY · PI BOGDANOVE, ADAM J, STODDARD, BARRY L. · 2011 to 2014
$2.0M
CIHR MOP 114958CIHR MOP 97780NIGMS NIH HHS R01 GM098861NIGMS NIH HHS R01GM098861
6 · The paper itself

Abstract

Precise genome editing in complex genomes is enabled by engineered nucleases that can be programmed to cleave in a site-specific manner. Here, we fused the small, sequence-tolerant monomeric nuclease domain from the homing endonuclease I-TevI to transcription-like activator effectors (TALEs) to create monomeric Tev-TALE nucleases (Tev-mTALENs). Using the PthXo1 TALE scaffold to optimize the Tev-mTALEN architecture, we found that choice of the N-terminal fusion point on the TALE greatly influenced activity in yeast-based assays, and that the length of the linker used affected the optimal spacing of the TALE binding site from the I-TevI cleavage site, specified by the motif 5'-CNNNG-3'. By assaying activity on all 64 possible sequence variants of this motif, we discovered that in the Tev-mTALEN context, I-TevI prefers A/T-rich triplets over G/C-rich ones at the cleavage site. Profiling of nucleotide requirements in the DNA spacer that separates the CNNNG motif from the TALE binding site revealed substantial, but not complete, tolerance to sequence variation. Tev-mTALENs showed robust mutagenic activity on an episomal target in HEK 293T cells consistent with specific cleavage followed by nonhomologous end-joining repair. Our data substantiate the applicability of Tev-mTALENs as genome-editing tools but highlight DNA spacer and cleavage site nucleotide preferences that, while enhancing specificity, do confer moderate targeting constraints.

Indexed as

Protein Interaction Domains and MotifsBase SequenceBinding SitesCell LineEndodeoxyribonucleasesEnzyme ActivationGene TargetingGenetic VariationGenetic VectorsHomeodomain ProteinsHumansMolecular Sequence DataNucleotide MotifsRecombinant Fusion ProteinsSubstrate SpecificityEndodeoxyribonucleasesHomeodomain ProteinsI-TEVI endonucleaseRecombinant Fusion Proteinsgenome editingGIY-YIG nucleaseI-TevImonomeric TALENTAL effector

Identifiers

PMID24739648
PMCPMC4065259
OpenAlexW2109724615

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.