Evidence map›Paper›PMID 24739388›Full record

ArticleThe Journal of biological chemistry2014

Rational design of broad spectrum antibacterial activity based on a clinically relevant enoyl-acyl carrier protein (ACP) reductase inhibitor.

Johannes Schiebel, Andrew Chang, Sonam Shah, Yang Lu, Li Liu, Pan Pan, Maria W Hirschbeck, Mona Tareilus, Sandra Eltschkner, Weixuan Yu and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Treatment of MRSA Infection: Where are We?Current medicinal chemistry · 2024
    Review
  4. Review
  5. A broad inhibitor of acyl-acyl carrier protein synthetases.Biochemistry and biophysics reports · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Structural approaches to pathway-specific antimicrobial agents.Translational research : the journal of laboratory and clinical medicine · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Better living through chemistry: Addressing emerging antibiotic resistance.Experimental biology and medicine (Maywood, N.J.) · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Johannes SchiebelFrom the Rudolf Virchow Center for Experimental Biomedicine, Institute for Structural Biology, University of Wuerzburg, D-97080 Wuerzburg, Germany, the Institute of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, D-97074 Wuerzburg, Germany.
Andrew Changthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and School of Dental Medicine, Department of Oral Biology and Pathology, Stony Brook University, Stony Brook, New York 11794-3400, and.
Sonam Shahthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and.
Yang Luthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and School of Dental Medicine, Department of Oral Biology and Pathology, Stony Brook University, Stony Brook, New York 11794-3400, and.
Li Liuthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and.
Pan Panthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and.
Maria W HirschbeckFrom the Rudolf Virchow Center for Experimental Biomedicine, Institute for Structural Biology, University of Wuerzburg, D-97080 Wuerzburg, Germany.
Mona TareilusFrom the Rudolf Virchow Center for Experimental Biomedicine, Institute for Structural Biology, University of Wuerzburg, D-97080 Wuerzburg, Germany.
Sandra EltschknerFrom the Rudolf Virchow Center for Experimental Biomedicine, Institute for Structural Biology, University of Wuerzburg, D-97080 Wuerzburg, Germany.
Weixuan Yuthe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and.
Jason E Cummingsthe Rocky Mountain Regional Center of Excellence and Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682.
Susan E Knudsonthe Rocky Mountain Regional Center of Excellence and Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682.
Gopal R Bomminenithe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and.
Stephen G WalkerSchool of Dental Medicine, Department of Oral Biology and Pathology, Stony Brook University, Stony Brook, New York 11794-3400, and.
Richard A Slaydenthe Rocky Mountain Regional Center of Excellence and Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado 80523-1682.
Christoph A Sotrifferthe Institute of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, D-97074 Wuerzburg, Germany.
Peter J Tongethe Institute for Chemical Biology and Drug Discovery, Department of Chemistry, and peter.tonge@stonybrook.edu.
Caroline KiskerFrom the Rudolf Virchow Center for Experimental Biomedicine, Institute for Structural Biology, University of Wuerzburg, D-97080 Wuerzburg, Germany, caroline.kisker@virchow.uni-wuerzburg.de.
Colorado State University · USStony Brook University · USUniversity of Würzburg · DE

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Chemotherapeutics Against Multi-Drug Resistant TuberculosisU01AI070383 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI TONGE, PETER J · 2006 to 2010
$3.4M
Mechanism of Slow Onset Enzyme Inhibition and Translation to Time-Dependent Drug ActivityR01GM102864 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI TONGE, PETER J · 2012 to 2021
$2.6M
Targetting InhA For Anti-TB Drug DiscoveryR01AI044639 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI TONGE, PETER J · 1999 to 2009
$1.9M
SBU Chemistry-Biology Interface Training ProgramT32GM092714 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S, TONGE, PETER J · 2010 to 2019
$1.7M
Acquisition of an Applied Biosystems 4000 QTRAP Mass SpectrometerS10RR023680 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI IDEN, CHARLES R · 2007 to 2007
$435k
Inhibition of Fatty Acid Biosynthesis in M. TuberculosisR21AI044639 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI TONGE, PETER J · 2003 to 2003
$252k
NCRR NIH HHS 1 S10 RR023680-1NCRR NIH HHS S10 RR023680NIAID NIH HHS AI044639NIAID NIH HHS AI070383NIAID NIH HHS R01 AI044639NIAID NIH HHS R21 AI044639NIAID NIH HHS U01 AI070383NIGMS NIH HHS GM102864NIGMS NIH HHS R01 GM102864NIGMS NIH HHS T32 GM008444NIGMS NIH HHS T32GM008444NIGMS NIH HHS T32 GM092714NIGMS NIH HHS T32GM092714
6 · The paper itself

Abstract

Determining the molecular basis for target selectivity is of particular importance in drug discovery. The ideal antibiotic should be active against a broad spectrum of pathogenic organisms with a minimal effect on human targets. CG400549, a Staphylococcus-specific 2-pyridone compound that inhibits the enoyl-acyl carrier protein reductase (FabI), has recently been shown to possess human efficacy for the treatment of methicillin-resistant Staphylococcus aureus infections, which constitute a serious threat to human health. In this study, we solved the structures of three different FabI homologues in complex with several pyridone inhibitors, including CG400549. Based on these structures, we rationalize the 65-fold reduced affinity of CG400549 toward Escherichia coli versus S. aureus FabI and implement concepts to improve the spectrum of antibacterial activity. The identification of different conformational states along the reaction coordinate of the enzymatic hydride transfer provides an elegant visual depiction of the relationship between catalysis and inhibition, which facilitates rational inhibitor design. Ultimately, we developed the novel 4-pyridone-based FabI inhibitor PT166 that retained favorable pharmacokinetics and efficacy in a mouse model of S. aureus infection with extended activity against Gram-negative and mycobacterial organisms.

Indexed as

Drug DesignAnimalsAnti-Bacterial AgentsBase SequenceCrystallography, X-RayDNA PrimersEnoyl-(Acyl-Carrier-Protein) Reductase (NADH)Enzyme InhibitorsFemaleMiceMice, Inbred ICRMicrobial Sensitivity TestsMolecular StructurePolymerase Chain ReactionPyridonesStaphylococcus aureusAnti-Bacterial AgentsDNA PrimersEnoyl-(Acyl-Carrier-Protein) Reductase (NADH)Enzyme InhibitorsPyridonesCG400549Drug DesignEnoyl-ACP ReductaseEnzyme InhibitorEnzyme StructureFabILipid SynthesisProtein Drug InteractionStaphylococcus aureusTarget Selectivity

Identifiers

PMID24739388
PMCPMC4047375
OpenAlexW2080588966

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.