ArticleMolecular biology and evolution2014
RetrogeneDB--a database of animal retrogenes.
Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
20 citing papers in PubMed.
- RCPedia: a global resource for studying and exploring retrocopies in diverse species.Bioinformatics (Oxford, England) · 2024Article
- HSDatabase-a database of highly similar duplicate genes from plants, animals, and algae.Database : the journal of biological databases and curation · 2022Article
- An overview of online resources for intra-species detection of gene duplications.Frontiers in genetics · 2022Review
- Correlated Expression of the Opsin Retrogene LWS-R and its Host Gene in Two Poeciliid Fishes.Zoological studies · 2022Article
- Article
- RetroScan: An Easy-to-Use Pipeline for Retrocopy Annotation and Visualization.Frontiers in genetics · 2021Article
- HSDFinder: A BLAST-Based Strategy for Identifying Highly Similar Duplicated Genes in Eukaryotic Genomes.Frontiers in bioinformatics · 2021Article
- Overcoming challenges and dogmas to understand the functions of pseudogenes.Nature reviews. Genetics · 2020Review
- Analysis of new retrogenes provides insight into dog adaptive evolution.Ecology and evolution · 2019Article
- Excess of retrogene traffic in pig X chromosome.Genetica · 2019Article
- Developmental Constraints on Genome Evolution in Four Bilaterian Model Species.Genome biology and evolution · 2018Article
- Natural antisense transcripts in diseases: From modes of action to targeted therapies.Wiley interdisciplinary reviews. RNA · 2018Review
- The hnRNP Q-like gene is retroinserted into the B chromosomes of the cichlid fish Astatotilapia latifasciata.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2017Article
- The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?Genome biology and evolution · 2017Article
- RetrogeneDB-a database of plant and animal retrocopies.Database : the journal of biological databases and curation · 2017Article
- Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta).Scientific reports · 2016Article
- Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii.Biology direct · 2016Article
- SinEx DB: a database for single exon coding sequences in mammalian genomes.Database : the journal of biological databases and curation · 2016Article
- Inter-population Differences in Retrogene Loss and Expression in Humans.PLoS genetics · 2015Article
- Processed pseudogene insertions in somatic cells.Mobile DNA · 2014Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Retrocopies of protein-coding genes, reverse transcribed and inserted into the genome copies of mature RNA, have commonly been categorized as pseudogenes with no biological importance. However, recent studies showed that they play important role in the genomes evolution and shaping interspecies differences. Here, we present RetrogeneDB, a database of retrocopies in 62 animal genomes. RetrogeneDB contains information about retrocopies, their genomic localization, parental genes, ORF conservation, and expression. To our best knowledge, this is the most complete retrocopies database providing information for dozens of species previously never analyzed in the context of protein-coding genes retroposition. The database is available at http://retrogenedb.amu.edu.pl.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.