Evidence map›Paper›PMID 24739148›Full record

ArticleJournal of the American Chemical Society2014

Dph7 catalyzes a previously unknown demethylation step in diphthamide biosynthesis.

Zhewang Lin, Xiaoyang Su, Wei Chen, Bo Ci, Sheng Zhang, Hening Lin

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Manipulation of the cell cycle by HIV-1.Biochemical Society transactions · 2026
    Review
  2. Integrative analysis of the role of theTranslational cancer research · 2024
    Article
  3. Yeast geneMicrobial cell (Graz, Austria) · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The asymmetric function of Dph1-Dph2 heterodimer in diphthamide biosynthesis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Hunting Viral Receptors Using Haploid Cells.Annual review of virology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zhewang LinDepartment of Chemistry and Chemical Biology and ‡Proteomics and Mass Spectrometry Core Facility, Cornell University , Ithaca, New York 14853, United States.
Xiaoyang Su
Wei Chen
Bo Ci
Sheng Zhang
Hening Lin
Cornell University · US

Funding

Diphthamide biosynthesisR01GM088276 · NIGMS · CORNELL UNIVERSITY · PI LIN, HENING · 2009 to 2017
$2.5M
Acquisition of a Hybrid Quadrupole, Ion Mobility Separation, Orthogonal AcceleratS10RR025449 · NCRR · CORNELL UNIVERSITY · PI ZHANG, SHENG · 2009 to 2009
$500k
NCRR NIH HHS S10 RR025449NIGMS NIH HHS R01 GM088276NIGMS NIH HHS R01GM088276
6 · The paper itself

Abstract

Present on archaeal and eukaryotic translation elongation factor 2, diphthamide represents one of the most intriguing post-translational modifications on proteins. The biosynthesis of diphthamide was proposed to occur in three steps requiring seven proteins, Dph1-7, in eukaryotes. The functional assignments of Dph1-5 in the first and second step have been well established. Recent studies suggest that Dph6 (yeast YLR143W or human ATPBD4) and Dph7 (yeast YBR246W or human WDR85) are involved in the last amidation step, with Dph6 being the actual diphthamide synthetase catalyzing the ATP-dependent amidation reaction. However, the exact molecular role of Dph7 is unclear. Here we demonstrate that Dph7 is an enzyme catalyzing a previously unknown step in the diphthamide biosynthesis pathway. This step is between the Dph5- and Dph6-catalyzed reactions. We demonstrate that the Dph5-catalyzed reaction generates methylated diphthine, a previously overlooked intermediate, and Dph7 is a methylesterase that hydrolyzes methylated diphthine to produce diphthine and allows the Dph6-catalyzed amidation reaction to occur. Thus, our study characterizes the molecular function of Dph7 for the first time and provides a revised diphthamide biosynthesis pathway.

Indexed as

Biosynthetic PathwaysGene DeletionHistidineHumansMethylationProtein Processing, Post-TranslationalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsdiphthamidediphthineHistidineRRT2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport Proteins

Identifiers

PMID24739148
PMCPMC4015618
OpenAlexW2065917802

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.