Evidence map›Paper›PMID 24737322›Full record

ArticleThe Journal of biological chemistry2014

Crystal structure of the transcriptional regulator Rv0678 of Mycobacterium tuberculosis.

Abhijith Radhakrishnan, Nitin Kumar, Catherine C Wright, Tsung-Han Chou, Marios L Tringides, Jani Reddy Bolla, Hsiang-Ting Lei, Kanagalaghatta R Rajashankar, Chih-Chia Su, Georgiana E Purdy and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 84 citations in OpenAlex.

  1. Pooled it
  2. Structure, assembly, and mechanism of the MmpL family of transporters.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  3. Article
  4. Frontiers in microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Frameshift mutations in theAntimicrobial agents and chemotherapy · 2024
    Article
  11. Multidrug-resistant tuberculosis.Nature reviews. Disease primers · 2024
    Review
  12. Review
  13. TheMicrobiology spectrum · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Hit Compounds and Associated Targets in IntracellularMolecules (Basel, Switzerland) · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Abhijith RadhakrishnanFrom the Department of Chemistry and.
Nitin KumarFrom the Department of Chemistry and.
Catherine C Wrightthe Department of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, Oregon 97239, and.
Tsung-Han Chouthe Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011.
Marios L TringidesFrom the Department of Chemistry and.
Jani Reddy BollaFrom the Department of Chemistry and.
Hsiang-Ting LeiFrom the Department of Chemistry and.
Kanagalaghatta R Rajashankarthe Northeastern Collaborative Access Team and Department of Chemistry and Chemical Biology, Cornell University, Argonne National Laboratory, Argonne, Illinois 60439.
Chih-Chia Suthe Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011.
Georgiana E Purdythe Department of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, Oregon 97239, and.
Edward W YuFrom the Department of Chemistry and the Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011, ewyu@iastate.edu.
Iowa State University · USOregon Health & Science University · USCornell University · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
TB Membrane Transporters and Intrinsic ResistanceR01AI087840 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI PURDY, GEORGIANA E. · 2011 to 2015
$1.9M
Metal ion export in bacteriaR01GM086431 · NIGMS · IOWA STATE UNIVERSITY · PI YU, EDWARD W · 2010 to 2013
$1.1M
NIAID NIH HHS R01 AI087840NIAID NIH HHS R01AI087840NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM086431NIGMS NIH HHS R01GM086431
6 · The paper itself

Abstract

Recent work demonstrates that the MmpL (mycobacterial membrane protein large) transporters are dedicated to the export of mycobacterial lipids for cell wall biosynthesis. An MmpL transporter frequently works with an accessory protein, belonging to the MmpS (mycobacterial membrane protein small) family, to transport these key virulence factors. One such efflux system in Mycobacterium tuberculosis is the MmpS5-MmpL5 transporter. The expression of MmpS5-MmpL5 is controlled by the MarR-like transcriptional regulator Rv0678, whose open reading frame is located downstream of the mmpS5-mmpL5 operon. To elucidate the structural basis of Rv0678 regulation, we have determined the crystal structure of this regulator, to 1.64 Å resolution, revealing a dimeric two-domain molecule with an architecture similar to members of the MarR family of transcriptional regulators. Rv0678 is distinct from other MarR regulators in that its DNA-binding and dimerization domains are clustered together. These two domains seemingly cooperate to bind an inducing ligand that we identified as 2-stearoylglycerol, which is a fatty acid glycerol ester. The structure also suggests that the conformational change leading to substrate-mediated derepression is primarily caused by a rigid body rotational motion of the entire DNA-binding domain of the regulator toward the dimerization domain. This movement results in a conformational state that is incompatible with DNA binding. We demonstrate using electrophoretic mobility shift assays that Rv0678 binds to the mmpS5-mmpL5, mmpS4-mmpL4, and the mmpS2-mmpL2 promoters. Binding by Rv0678 was reversed upon the addition of the ligand. These findings provide new insight into the mechanisms of gene regulation in the MarR family of regulators.

Indexed as

Amino Acid SequenceBase SequenceCrystallography, X-RayDimerizationDNA PrimersMolecular Sequence DataMycobacterium tuberculosisPolymerase Chain ReactionSequence Homology, Amino AcidDNA PrimersBacterial TranscriptionCrystal StructureFatty Acid TransportInfectious DiseasesMarR Family RegulatorsMycobacterial Membrane Protein LargeMycobacterial Membrane Protein SmallMycobacterium tuberculosisRv0678Transcriptional Regulation

Identifiers

PMID24737322
PMCPMC4047419
OpenAlexW2005166795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.