Evidence map›Paper›PMID 24736505›Full record

ArticleNature communications2014

Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS.

Ulises Rosas, Yu Mei, Qiguang Xie, Joshua A Banta, Royce W Zhou, Gabriela Seufferheld, Silvia Gerard, Lucy Chou, Naeha Bhambhra, Jennifer Deane Parks and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 90 citations in OpenAlex.

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  18. Frontiers in plant science · 2022
    Article
  19. Functional homoeologous alleles of CONSTANS contribute to seasonal crop type in rapeseed.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Ulises RosasDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Yu MeiDepartment of Crop Science, University of Illinois, Urbana-Champaign, Champaign, Illinois 61801, USA.
Qiguang XieDepartment of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755, USA.
Joshua A Banta1] Department of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA [2] Department of Biology, The University of Texas at Tyler, Tyler, Texas 75799, USA.
Royce W ZhouDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Gabriela SeufferheldDepartment of Crop Science, University of Illinois, Urbana-Champaign, Champaign, Illinois 61801, USA.
Silvia GerardDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Lucy ChouDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Naeha BhambhraDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Jennifer Deane ParksDepartment of Biology, The University of Texas at Tyler, Tyler, Texas 75799, USA.
Jonathan M FlowersDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
C Robertson McClungDepartment of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755, USA.
Yoshie HanzawaDepartment of Crop Science, University of Illinois, Urbana-Champaign, Champaign, Illinois 61801, USA.
Michael D PuruggananDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
New York University · USUniversity of Illinois Urbana-Champaign · USDartmouth College · USThe University of Texas at Tyler · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The onset of flowering, the change from vegetative to reproductive development, is a major life history transition in flowering plants. Recent work suggests that mutations in cis-regulatory mutations should play critical roles in the evolution of this (as well as other) important adaptive traits, but thus far there has been little evidence that directly links regulatory mutations to evolutionary change at the species level. While several genes have previously been shown to affect natural variation in flowering time in Arabidopsis thaliana, most either show protein-coding changes and/or are found at low frequency (<5%). Here we identify and characterize natural variation in the cis-regulatory sequence in the transcription factor CONSTANS that underlies flowering time diversity in Arabidopsis. Mutation in this regulatory motif evolved recently and has spread to high frequency in Arabidopsis natural accessions, suggesting a role for these cis-regulatory changes in adaptive variation of flowering time.

Indexed as

ArabidopsisGene Expression Regulation, PlantArabidopsis ProteinsBase SequenceDNA-Binding ProteinsEvolution, MolecularFlowersGenetic VariationMolecular Sequence DataMutationPhenotypeReproductionTime FactorsTranscription FactorsArabidopsis ProteinsCONSTANS protein, ArabidopsisDNA-Binding ProteinsTranscription Factors

Identifiers

PMID24736505
PMCPMC3997802
OpenAlexW1982666368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.